Stats: Allow partial pooling of sample-specific prevalence estimates
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In the current model, each sample has its own "true prevalence" parameter and they are independent of one another. In the previous version, all samples shared a single "true prevalence" parameter.
Ultimately, we would like to have a model that allows for both shared and independent variation, e.g.:
where
In this setting, our prevalence data would be emitted directly from either
Ultimately, we might want the thetas to be a Gaussian process over time and locations and have both sequence data and prevalence data be emitted from this process.
Closing as not worth the effort.