natir/fpa

The meanings of internal match and containment

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JieZhouFighting commented

Dear Authors,

I don't understand the meanings of internal match and containment clearly, so I want to know their meanings and what characteristics they have in the alignment file.

natir commented

Hi,

I think the best definition could be find in Minimap and Miniasm publication check Figure 1 and Algorithm 5. We just apply this algorithm.

If I solve your trouble please close this issue. If you have any other question, don't hesitate to create another issue.