"nan" for squared correlation between prior and posterior genotypes (fSNPs)
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gouthamatla commented
Hi Natsuhiko,
I ran RASQUAL on ATAC-Seq data to get the lead SNP per peak. Out of 121,214 peaks I analyzed, 54,232 snps have -nan in the 24th column, Squared correlation between prior and posterior genotypes (fSNPs)
. Is it because those SNPs are not fSNPs but rSNPs ?
Thanks,
Goutham A
natsuhiko commented
Hi Goutham,
If there is no fSNP within the feature, the 24th column becomes NA.
Best regards,
Natsuhiko
gouthamatla commented
Thanks Natsuhiko for quick reply.