"nan" for squared correlation between prior and posterior genotypes (fSNPs)

Question

"nan" for squared correlation between prior and posterior genotypes (fSNPs)

Closed this issue 6 years ago · 2 comments

Hi Natsuhiko,

I ran RASQUAL on ATAC-Seq data to get the lead SNP per peak. Out of 121,214 peaks I analyzed, 54,232 snps have -nan in the 24th column, Squared correlation between prior and posterior genotypes (fSNPs) . Is it because those SNPs are not fSNPs but rSNPs ?

Thanks,
Goutham A

Answer 1 · 2019-02-12T22:08:38.000Z

Hi Goutham,

If there is no fSNP within the feature, the 24th column becomes NA.

Best regards,
Natsuhiko

Answer 2 · 2019-02-13T06:51:10.000Z

Thanks Natsuhiko for quick reply.