Visualizing QTLs (coverage boxplot)
wlwtan opened this issue · 1 comments
wlwtan commented
Hi,
In order to visualize the association between genotype of a specific locus and the expression/chip height, I am wondering if "unprocessed raw count" should be used ?
For the detection of QTLs, I have included covariates in the analysis. Is there any function included in the package that would generate covariate-adjusted expression count?
Wilson
natsuhiko commented
The covariates are included in the model, and it is impossible to generate the adjusted count from the model.