Visualizing QTLs (coverage boxplot)

[wlwtan]

Hi,

In order to visualize the association between genotype of a specific locus and the expression/chip height, I am wondering if "unprocessed raw count" should be used ?

For the detection of QTLs, I have included covariates in the analysis. Is there any function included in the package that would generate covariate-adjusted expression count?

Wilson

[natsuhiko]

The covariates are included in the model, and it is impossible to generate the adjusted count from the model.