pip install failure
Closed this issue · 3 comments
I'm trying to install this on the Linux subsystem of WIn10 and getting an error on the pip install. Below is the command and output.
The short version is ampere/models/SPM/SPM_par.c:615:26: fatal error: SPM_par.source: No such file or directory, the longer version is below.
I'll be honest, not sure where it is even looking for the file.
| => pip3 install ampere
Collecting ampere
Using cached https://files.pythonhosted.org/packages/5b/85/3bc85e1f206377584f7938bf6c6adcc32279fb96793f84f44d58f3333386/ampere-0.2.4.tar.gz
Requirement already satisfied: matplotlib in /usr/local/lib/python3.5/dist-packages (from ampere) (3.0.2)
Requirement already satisfied: numpy in /usr/local/lib/python3.5/dist-packages (from ampere) (1.16.0)
Requirement already satisfied: scipy in /usr/local/lib/python3.5/dist-packages (from ampere) (1.2.0)
Requirement already satisfied: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 in /usr/local/lib/python3.5/dist-packages (from matplotlib->ampere) (2.3.1)
Requirement already satisfied: cycler>=0.10 in /usr/local/lib/python3.5/dist-packages (from matplotlib->ampere) (0.10.0)
Requirement already satisfied: python-dateutil>=2.1 in /usr/local/lib/python3.5/dist-packages (from matplotlib->ampere) (2.7.5)
Requirement already satisfied: kiwisolver>=1.0.1 in /usr/local/lib/python3.5/dist-packages (from matplotlib->ampere) (1.0.1)
Requirement already satisfied: six in /usr/lib/python3/dist-packages (from cycler>=0.10->matplotlib->ampere) (1.10.0)
Requirement already satisfied: setuptools in /usr/lib/python3/dist-packages (from kiwisolver>=1.0.1->matplotlib->ampere) (20.7.0)
Building wheels for collected packages: ampere
Building wheel for ampere (setup.py) ... error
Complete output from command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-install-fkp9_h47/ampere/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/pip-wheel-wemswh_m --python-tag cp35:
['ampere', 'ampere.models', 'ampere.tests', 'ampere.models.P2D', 'ampere.models.SPM']
/usr/lib/python3.5/distutils/dist.py:261: UserWarning: Unknown distribution option: 'long_description_content_type'
warnings.warn(msg)
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.5
creating build/lib.linux-x86_64-3.5/ampere
copying ampere/__init__.py -> build/lib.linux-x86_64-3.5/ampere
copying ampere/ampere.py -> build/lib.linux-x86_64-3.5/ampere
copying ampere/analytical.py -> build/lib.linux-x86_64-3.5/ampere
copying ampere/fitting.py -> build/lib.linux-x86_64-3.5/ampere
copying ampere/numerical.py -> build/lib.linux-x86_64-3.5/ampere
copying ampere/plotting.py -> build/lib.linux-x86_64-3.5/ampere
creating build/lib.linux-x86_64-3.5/ampere/models
copying ampere/models/__init__.py -> build/lib.linux-x86_64-3.5/ampere/models
creating build/lib.linux-x86_64-3.5/ampere/tests
copying ampere/tests/__init__.py -> build/lib.linux-x86_64-3.5/ampere/tests
creating build/lib.linux-x86_64-3.5/ampere/models/P2D
copying ampere/models/P2D/__init__.py -> build/lib.linux-x86_64-3.5/ampere/models/P2D
copying ampere/models/P2D/setup.py -> build/lib.linux-x86_64-3.5/ampere/models/P2D
copying ampere/models/P2D/solve.py -> build/lib.linux-x86_64-3.5/ampere/models/P2D
copying ampere/models/P2D/test.py -> build/lib.linux-x86_64-3.5/ampere/models/P2D
creating build/lib.linux-x86_64-3.5/ampere/models/SPM
copying ampere/models/SPM/__init__.py -> build/lib.linux-x86_64-3.5/ampere/models/SPM
copying ampere/models/SPM/setup.py -> build/lib.linux-x86_64-3.5/ampere/models/SPM
copying ampere/models/SPM/solve.py -> build/lib.linux-x86_64-3.5/ampere/models/SPM
copying ampere/models/SPM/test.py -> build/lib.linux-x86_64-3.5/ampere/models/SPM
running build_ext
building 'ampere.models.SPM.SPM_par' extension
creating build/temp.linux-x86_64-3.5
creating build/temp.linux-x86_64-3.5/ampere
creating build/temp.linux-x86_64-3.5/ampere/models
creating build/temp.linux-x86_64-3.5/ampere/models/SPM
x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.5m -c ampere/models/SPM/SPM_par.c -o build/temp.linux-x86_64-3.5/ampere/models/SPM/SPM_par.o
In file included from /usr/include/numpy/ndarraytypes.h:1777:0,
from /usr/include/numpy/ndarrayobject.h:18,
from /usr/include/numpy/arrayobject.h:4,
from ampere/models/SPM/SPM_par.c:613:
/usr/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^
ampere/models/SPM/SPM_par.c:615:26: fatal error: SPM_par.source: No such file or directory
compilation terminated.
error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
Yes, I've been trying to get the package to be pip installable, but I haven't had much luck. I've been working on other things, but will have more time for this soon. The problem right now is that not all of the source files are being sent to pip, as the C and cython files need to be compiled on the machine during installation.
Once I figure that out, it should work, but I just noticed that the cython wrapper that I made seems to only work in windows - it gives a segfault in Linux for some reason. I'll update this issue when I get these problems fixed.
In the meantime, on Windows, the package can be used by downloading from Git and navigating to the ampere/models/SPM and ampere/models/P2D folders and running the following command:
python setup.py build_ext --inplace
Once the binaries are compiled, the library works perfectly.
the most recent commit fixed the compilation error in linux, so the above method should now also work in linux. Still working on making it properly pip installable
The package is officially pip installable in both Linux and Windows, but you'll need to install Cython and Numpy first. It can handle the other dependencies.