neherlab/pan-genome-analysis

Extracting data for individual genomes

mdieser opened this issue · 2 comments

mdieser commented

Hi - I have analyzed and uploaded 30 bacterial genomes from environmental isolates to the local host/8000. Is there a way to extract all duplication events individual genomes?

Thanks
Markus

rneher commented

I don't think there is a straightforward way to do this. But the geneCluster.json contains a field which for each gene cluster lists all locus_tag/strain combinations that are part of the cluster. you could back out this info from there.

mdieser commented

I'll try that. Thanks.