neuml/paperetl

Issues

• Can't insert all my data into sqlite database.

  #56 opened 4 months ago by kellytsorb
  0

• .xml references not processed

  #55 opened 9 months ago by amscosta2022
  2

• example data processing warning using google colab

  #54 opened 9 months ago by amscosta
  4

• sample lines for running etl server and grobid instance

  #53 opened 9 months ago by amscosta
  1

• sqlite3.OperationalError: database is locked

  #45 opened a year ago by Chriszhangmw
  6

• Scaling to create a proccess per cpu core overwhelms grobid service

  #50 opened a year ago by elshimone
  1

• AttributeError: 'NoneType' object has no attribute 'upper'

  #46 opened a year ago by wmurphy126
  3

• Zotero connection

  #49 opened a year ago by andreifoldes
  1

• Update setup.py to only show standard image on PyPI

  #48 opened a year ago by davidmezzetti
  0

• Update minimum Python version to 3.8

  #47 opened a year ago by davidmezzetti
  0

• Add example notebook

  #43 opened 2 years ago by davidmezzetti
  0

• Update CORD-19 scripts

  #44 opened 2 years ago by davidmezzetti
  0

• Issue processing into Elasticsearch

  #41 opened 2 years ago by jak1502
  5

• Improve PMB filtering logic

  #42 opened 2 years ago by davidmezzetti
  0

• Require Python 3.7+

  #40 opened 3 years ago by davidmezzetti
  0

• Support reading compressed files

  #39 opened 3 years ago by davidmezzetti
  0

• Add database flag to determine if database should be replaced

  #37 opened 3 years ago by davidmezzetti
  0

• Add multiprocessing support to files process

  #38 opened 3 years ago by davidmezzetti
  0

• Remove legacy merge logic

  #36 opened 3 years ago by davidmezzetti
  0

• Add arXiv as source

  #17 opened 3 years ago by davidmezzetti
  0

• Evaluate integrating with paperoni

  #21 opened 3 years ago by davidmezzetti
  1

• Add pre-commit checks

  #35 opened 3 years ago by davidmezzetti
  0

• Remove study attribute and design models and all related dependencies

  #34 opened 3 years ago by davidmezzetti
  0

• Support spaCy 3.0

  #28 opened 3 years ago by davidmezzetti
  2

• Detect month changes in CORD-19 entry date process

  #33 opened 3 years ago by davidmezzetti
  0

• Add PubMed as source

  #16 opened 3 years ago by davidmezzetti
  0

• Update CORD-19 entry dates source

  #32 opened 4 years ago by davidmezzetti
  0

• Add common method for accessing Grammar object

  #31 opened 4 years ago by davidmezzetti
  0

• Add generic CSV source

  #30 opened 4 years ago by davidmezzetti
  0

• Improve sample size extraction

  #29 opened 4 years ago by davidmezzetti
  0

• Ensure length of sections is less than max nlp length

  #27 opened 4 years ago by davidmezzetti
  0

• Review and update README.md

  #20 opened 4 years ago by davidmezzetti
  1

• Add pre-trained study design models to GitHub

  #19 opened 4 years ago by davidmezzetti
  2

• Add component to build entry-dates.csv

  #18 opened 4 years ago by davidmezzetti
  0

• Add dockerfile for building paperetl environment

  #9 opened 4 years ago by davidmezzetti
  0

• Fix bug with study model training

  #26 opened 4 years ago by davidmezzetti
  0

• Fix bug with JSON export

  #25 opened 4 years ago by davidmezzetti
  0

• Modify merge method to handle no update merges

  #24 opened 4 years ago by davidmezzetti
  0

• Increase test coverage

  #23 opened 4 years ago by davidmezzetti
  0

• Build test suite

  #15 opened 4 years ago by davidmezzetti
  0

• Use XML id for file figure processing

  #13 opened 4 years ago by davidmezzetti
  0

• Filter duplicate ids

  #14 opened 4 years ago by davidmezzetti
  0

• Add file name as source for file process

  #12 opened 4 years ago by davidmezzetti
  0

• Remove citations table/index

  #11 opened 4 years ago by davidmezzetti
  0

• Feature: Incremental database update

  #10 opened 4 years ago by davidmezzetti
  0

• Better error handling for parsing publication date

  #8 opened 4 years ago by davidmezzetti
  0

• Recursively process files in input directory

  #7 opened 4 years ago by davidmezzetti
  0

• Additional installation steps and bug for CORD-19

  #6 opened 4 years ago by DavidRivasPhD
  2

• Error either with or without pre-trained attribute file

  #5 opened 4 years ago by DavidRivasPhD
  4

• what I missing? KeyError: '47235b96c07e8066195b6521882340408b9bdd34'

  #4 opened 4 years ago by SeekPoint
  1