neurolabusc
My work aims to enhance the diagnosis, prognosis and treatment of language and perceptual impairments experienced following stroke.
Columbia, SC
Pinned Repositories
AppleSiliconForNeuroimaging
Review the challenges and potential of ARM-based Apple Silicon macOS for brain imaging research
Clinical
Clinical Toolbox for SPM (https://www.nitrc.org/projects/clinicaltbx/)
Fast-Quadric-Mesh-Simplification-Pascal-
Mesh triangle reduction using quadrics (for Delphi, Lazarus and Pascal)
Metal-Demos
Examples of Apple's Metal API using Lazarus and Ryan Joseph's lazmetalcontrol
MRIcroGL10_OLD
DEPRECATED development has moved to https://github.com/rordenlab/MRIcroGL
MRIcron
Simple medical imaging visualization tool designed for NIfTI images. Includes dcm2nii for conversion of DICOM, Philips, and other proprietary formats.
nii2mesh
Convert NIfTI volume to triangulated mesh using marching cubes
NiiStat
NiiStat is a set of Matlab scripts for analyzing neuroimaging data from clinical populations
surf-ice
GLSL surface rendering source code. Compiled versions available from NITRC. Loads 3DS, CTM, DXF, FreeSurfer, GII (GIfTI), GTS, LWO2, MS3D, MZ3, NV (BrainNetViewer), OBJ, OFF, PLY, STL, VTK. Tractography formats include BFloat, PDB, TCK, TRK, and VTK. Also NIfTI format voxelwise images.
vx
Simple Volume Renderer
neurolabusc's Repositories
neurolabusc/AppleSiliconForNeuroimaging
Review the challenges and potential of ARM-based Apple Silicon macOS for brain imaging research
neurolabusc/nii2mesh
Convert NIfTI volume to triangulated mesh using marching cubes
neurolabusc/OpenGLCoreTutorials
Cross-platform (Linux, Mac and Windows) OpenGL projects using Core specification
neurolabusc/dcm2niix
dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC
neurolabusc/dcm_qa
DICOM to NIfTI/BIDS validation script
neurolabusc/simplifyjs
Live three.js mesh simplification demo https://neurolabusc.github.io/simplifyjs/
neurolabusc/StrokeOutcomeOptimizationProjectDemo
Stroke Outcome Optimization Project (SOOP) Demonstration of Processing and Inference
neurolabusc/dcm_qa_nih
DICOM to NIfTI/BIDS validation script
neurolabusc/AphasiaRecoveryCohortDemo
Aphasia Recovery Cohort (ARC) Demonstration of Processing and Inference
neurolabusc/LewinerMarchingCubes
AFNI marching cubes
neurolabusc/CPUsForNeuroimaging
Review of available CPUs for brain imaging research
neurolabusc/dcm_qa_table
DICOM to NIfTI/BIDS validation script for data for TablePosition
neurolabusc/mesh-simplify
Simple ThreeJS mesh simplification demo
neurolabusc/mydeface
defacing utility for MRI images
neurolabusc/niivue-brainchop
Niivue + brainchop demo implementation
neurolabusc/T2lesion
Edge-based AI tool to map chronic stroke lesions from T2-weighted MRI
neurolabusc/brainchop4
Brainchop: In-browser 3D MRI rendering and segmentation
neurolabusc/dcm_qa_ct
Example DICOM format Computerized Axial Tomography (CT/CAT) scans.
neurolabusc/dcm_qa_dti
Sample diffusion tensor images from a Siemens 3T Prisma (software D13)
neurolabusc/dcm_qa_mprage
DICOM T1-weighted validation dataset
neurolabusc/h2c
Convert NIfTI images from Hounsfield Units to `Cormack` Units (and back)
neurolabusc/neurolabusc
Chris Rorden's GitHub profile
neurolabusc/NIFTI-Reader-Demo
Minimal demo for running NIFTI-Reader-JS
neurolabusc/niivue-neglect
Predict chronic spatial neglect
neurolabusc/niivue-niimath
Example code demonstrating integrating niivue, niimath using a Web Worker
neurolabusc/niivue-onnx
Experimental ONNX
neurolabusc/niivue-simplify
Comparison of mesh simplification methods.
neurolabusc/TRK
Python scripts for validating the TRK format
neurolabusc/trx-javascript
JavaScript reader for the TRX tractography file format.
neurolabusc/WebModelDemo