Dated nodes in SARS-COV-2 tree

[jeromekelleher]

Hi 👋 thanks for an amazing resource!

I would find it very useful if the node times used in the main UI could be included somewhere in the archival datasets (e.g. here)

I'm using these archival datasets over the download options provided in the main UI for two reasons: (1) it's nice to have a stable URL to use in my scripts rather than manually downloading the data from the web browser; and (2) the UI doesn't seem to provide a JSON option any more which I find far easier to use than the newick based options (although I recognise I'm in a minority there).

Would it be possible to add the dates to the archived tree please, or could you advise on any other alternatives?

[rneher]

Hi Jerome,
sorry about the late reply. Am I understanding you correctly that you are interested in past version of the nextclade reference trees for SARS-CoV-2? This repo should contain all date-stamped releases of nextclade datasets.

for the main builds, they are available as for example

https://nextstrain.org/ncov/gisaid/global/6m/2023-01-30

Not every day exists, because we don't get updated every day.

[jeromekelleher]

Hi Richard - thanks for getting back. I'm actually interested in getting the "time tree" for some older datasets, but I think this has been resolved elsewhere.