Chack whether `--assembly_type` parameter is requiered in nextflow run and update `README.md`
Daniel-VM opened this issue · 0 comments
Daniel-VM commented
Description of the bug
The pipeline usage documentation might need to be updated because there seems to be an issue in the nextflow run command when the --assembly_type parameter is absent.
nextflow run nf-core/bacass \
-profile <docker/singularity/.../institute> \
--input samplesheet.tsv \
--outdir <OUTDIR>
The issue aim is to check that the --assembly_type parameter is indeed required to run nf-core/bacass.
Command used and terminal output
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Relevant files
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System information
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