add pgge
subwaystation opened this issue · 2 comments
subwaystation commented
nf-core/pangenome feature request
Hi there!
Describe the solution you'd like
Integrate the pangenome graph evaluator pgge.
subwaystation commented
As a short term solution, all functionality of pgge are put into a submodule using the soon-to-be-there docker image based on https://github.com/jmonlong/docker-pgge.
On the long term, all tools in the pgge submodule should become their own module.
This issue depends on pangenome/pgge#16.
subwaystation commented
We will rather use a MUMMER evaluation of the graph, for details see https://www.biorxiv.org/content/10.1101/2023.04.05.535718v1.