nfdi4plants/ARCitect

[BUG] Blank content in assay sheets (for MS data)

Closed this issue · 5 comments

garibayh commented

OS and framework information (please complete the following information):

  • Windows 10

Describe the bug

  • In an ARC that was already working (in previous versions v0.0.31) I cannot open anymore some sheets in my assays. Particularly, this happens in the assays related to MS data.

  • Steps to reproduce

  1. Open Assay with different sheets in ARCitect;
    20240709_Assay

  2. Open Sheet from Assay, that works Ok :)
    20240709_Assay-CorrectSheet

  3. Open MS-related sheet that looks empty (but is not empty!) :(
    20240709_Assay-MSSheet

The sheets are completely available in the downloaded isa file:
20240709_Assay-MSSheet-IsaFile

  • Expected behavior
    To make it work again :)

  • Ideas for solution

Freymaurer commented

Hello! Is this ARC publicly available? Can you open the developer console (Ctrl + Shift + i) and keep it open while trying to open the "MS-related sheet" and sent us a screen shot + text of possible logs?

garibayh commented

Hello! An error appears in the console when I try to open the blank sheets:
20240709_Assay-MSSheet_ConsoleError

Received Assay ValidTiming_BuP02_MS from ARCitect!
14index-DJejvIHO.js:108 Error: Match failure: ARCtrl.CompositeCell
at ore (index-DJejvIHO.js:108:209127)
at index-DJejvIHO.js:108:216344
at bF.f (index-DJejvIHO.js:4:15988)
at bF.GetEnumerator (index-DJejvIHO.js:4:13971)
at bt (index-DJejvIHO.js:1:1799)
at So (index-DJejvIHO.js:4:9685)
at Ae (index-DJejvIHO.js:4:16255)
at index-DJejvIHO.js:108:215884
at bF.f (index-DJejvIHO.js:4:15988)
at bF.GetEnumerator (index-DJejvIHO.js:4:13971)

index-DJejvIHO.js:108 Uncaught Error: Match failure: ARCtrl.CompositeCell
at ore (index-DJejvIHO.js:108:209127)
at index-DJejvIHO.js:108:216344
at bF.f (index-DJejvIHO.js:4:15988)
at bF.GetEnumerator (index-DJejvIHO.js:4:13971)
at bt (index-DJejvIHO.js:1:1799)
at So (index-DJejvIHO.js:4:9685)
at Ae (index-DJejvIHO.js:4:16255)
at index-DJejvIHO.js:108:215884
at bF.f (index-DJejvIHO.js:4:15988)
at bF.GetEnumerator (index-DJejvIHO.js:4:13971)
ore @ index-DJejvIHO.js:108
(anonymous) @ index-DJejvIHO.js:108
(anonymous) @ index-DJejvIHO.js:4
GetEnumerator @ index-DJejvIHO.js:4
bt @ index-DJejvIHO.js:1
So @ index-DJejvIHO.js:4
Ae @ index-DJejvIHO.js:4
(anonymous) @ index-DJejvIHO.js:108
(anonymous) @ index-DJejvIHO.js:4
GetEnumerator @ index-DJejvIHO.js:4
bt @ index-DJejvIHO.js:1
(anonymous) @ index-DJejvIHO.js:4
System.Collections.IEnumerator.MoveNext @ index-DJejvIHO.js:4
(anonymous) @ index-DJejvIHO.js:4
System.Collections.IEnumerator.MoveNext @ index-DJejvIHO.js:4
(anonymous) @ index-DJejvIHO.js:4
System.Collections.IEnumerator.MoveNext @ index-DJejvIHO.js:4
(anonymous) @ index-DJejvIHO.js:4
System.Collections.IEnumerator.MoveNext @ index-DJejvIHO.js:4
So @ index-DJejvIHO.js:4
Ae @ index-DJejvIHO.js:4
rw @ index-DJejvIHO.js:108
px @ index-DJejvIHO.js:106
l$ @ index-DJejvIHO.js:108
o$ @ index-DJejvIHO.js:108
tJ @ index-DJejvIHO.js:108
S1 @ index-DJejvIHO.js:108
$S @ index-DJejvIHO.js:108
BT @ index-DJejvIHO.js:108
mf @ index-DJejvIHO.js:106
(anonymous) @ index-DJejvIHO.js:108

Freymaurer commented

Could you send us the relevant file? I will investigate this issue!

garibayh commented

It happens with several files... I placed a second one that is not MS related
isa.assay.xlsx
isa.assay.xlsx

Freymaurer commented

Thank you for sharing the files, i tested the files with the current development version of Swate and they are running. I suspect the error to be related to our implementation work towards the datamap specification.

nfdi4plants/ARC-specification#104

It seems like ARCitect, Swate, ARCtrl are out of sync at the moment for some cases. This will hopefully be fixed soon. Expect the next Swate release tomorrow night. This should resolve your issue! I will close this for now, should it persist over the next few days or you have more questions feel free to reopen 🙂