Better classification of the repositories and minimum information standards
xiaoranzhou opened this issue · 0 comments
xiaoranzhou commented
I need suggestions and ideas to better connect the
- Type of data:
Genetic data
Other NGS (genomics)
Cloned DNA
Transcriptomics
RNAseq
Metabolomics
Proteomics
Plant phenotypic data
Targeted assays (e.g. glucose and fructose content)
Image datasets
Models
Code
Excel - The repositories:
NCBI-GenBank
NCBI-SRA (Sequence Read Archive)
NCBI-GEO (Gene Expression Omnibus)
EBI-ENA (European Nucleotide Archive)
EBI-ArrayExpress
EBI-Metabolights
EBI-PRIDE (PRoteomics IDEntifications Database)
EBI-BioImage Archive
IDR (Image Data Resource)
e!DAL-PGP (Plant Genomics & Phenomics Research Data Repository)
Metabolomics Workbench
PDB (Protein Data Bank)
Chebi (Chemical Entities of Biological Interest)
Other Endpoint Repositories: - The minimal information standards:
MIAPPE (Minimum Information About a Plant Phenotyping Experiment)
MIxS (Minimum Information about any (X) Sequence)
MigsEu (Minimum Information about a Genome Sequence: Eucaryote)
MigsOrg (Minimum Information about a Genome Sequence: Organelle)
MIMS (Minimum Information about Metagenome or Environmental)
MIMARKSSpecimen (Minimal Information about a Marker Specimen: Specimen)
MIMARKSSurvey (Minimal Information about a Marker Specimen: Survey)
MISAG (Minimum Information about a Single Amplified Genome)
MIMAG (Minimum Information about Metagenome-Assembled Genome)
MIAMET (Minimum Information About a METabolomics experiment)
MINSEQE (Minimum Information about a high-throughput SEQuencing Experiment)
REMBI (Recommended Metadata for Biological Images)
MIAPE (Minimum Information About a Proteomics Experiment)
MIMix (Molecular Interactions)