NMDP

Find Cures, Save Lives

Minneapolis, MN

Pinned Repositories

b-leader
HLA-B Leader Peptide Microservice and Tool
Language:TypeScript0 8 02
dash
Data Standards Hackathon for NGS based typing.
Language:HTML13 21 3213
dpb1-prediction
DPB1 and TCE Prediction
Language:Python0 7 33
flow
Consensus assembly and variant calling workflow.
12 13 137
gfe-db
Graph database representing IPD-IMGT/HLA sequence data as GFE
Language:Makefile9 19 4215
grimm
GRIMM: Graph IMputation and Matching for HLA Genotypes
Language:Python9 9 06
ImmunogeneticDataTools
Immunogenetic Data Tools related to HLA, GLStrings, Linkage Disequilibrium
Language:Java11 11 767
ngs
Next generation sequencing (NGS/HTS) tools.
Language:Java18 11 8617
nmdp-python-project-template
Python project template for NMDP Bioinformatics
Language:Python1 8 02
py-ard
HLA ARD Reduction in Python
Language:Python17 12 16813

NMDP's Repositories

nmdp-bioinformatics/ngs
Next generation sequencing (NGS/HTS) tools.
Language:Java18 11 8617
nmdp-bioinformatics/py-ard
HLA ARD Reduction in Python
Language:Python17 12 16813
nmdp-bioinformatics/dash
Data Standards Hackathon for NGS based typing.
Language:HTML13 21 3213
nmdp-bioinformatics/ImmunogeneticDataTools
Immunogenetic Data Tools related to HLA, GLStrings, Linkage Disequilibrium
Language:Java11 11 767
nmdp-bioinformatics/gfe-db
Graph database representing IPD-IMGT/HLA sequence data as GFE
Language:Makefile9 19 4215
nmdp-bioinformatics/grimm
GRIMM: Graph IMputation and Matching for HLA Genotypes
Language:Python9 9 06
nmdp-bioinformatics/phycus
Service used for curation of Haplotype Frequency
Language:Java7 22 4021
nmdp-bioinformatics/seq-ann
Python package for doing fast and accurate sequence annotation
Language:Python5 13 98
nmdp-bioinformatics/imgt2aa
extract aligned amino acid sequences from IMGT/HLA
Language:Perl4 16 13
nmdp-bioinformatics/gfe-service
GFE Webservice: Provides REST endpoints to GFE related functions
Language:Python3 6 97
nmdp-bioinformatics/imgt_biosqldb
The IMGT/HLA sequence data persisted in a BioSQL database
Language:Python3 9 03
nmdp-bioinformatics/gfe-docker-compose-app
GFE service and GFE Database Docker Compose
2
nmdp-bioinformatics/hapi-fhir
HAPI FHIR - Java API for HL7 FHIR Clients and Servers
Language:Java2 9 01
nmdp-bioinformatics/py-gfe
Python package for creating GFE notation from annotated sequences
Language:Python2 17 119
nmdp-bioinformatics/py-graph-imputation
Graph Imputation
Language:Python2 6 97
nmdp-bioinformatics/service-feature
Enumerated sequence feature service.
Language:Java2 13 2610
nmdp-bioinformatics/hml-validation-portal
Portal for HML validation
Language:HTML1 6 53
nmdp-bioinformatics/nmdp-bioinformatics.github.io
Organization Website for NMDP Bioinformatics
Language:HTML1 6 02
nmdp-bioinformatics/nmdp-python-project-template
Python project template for NMDP Bioinformatics
Language:Python1 8 02
nmdp-bioinformatics/tarr2fhir
Convert tarr2fhir Sync4Genes - Versiti and GenDx
Language:Java1 11 01
nmdp-bioinformatics/dpb1-expression
DPB1 expression Tool
Language:Python0 5 11
nmdp-bioinformatics/dpb1-prediction
DPB1 and TCE Prediction
Language:Python0 7 33
nmdp-bioinformatics/asom
ASOM: Age/Sex Optimal Matching
Language:R4 01
nmdp-bioinformatics/homebrew-tap
Tap to install nmdp-bioinformatics software for Homebrew
Language:Ruby5 1
nmdp-bioinformatics/kafka-producer
Language:Java16 0
nmdp-bioinformatics/py-graph-em
Python graph based Expectation Maximization
Language:Python5 03
nmdp-bioinformatics/py-graph-match
Graph Match
Language:Python5 03
nmdp-bioinformatics/pyard-legacy
Legacy pyard repo. Not used anymore
Language:Python5 0
nmdp-bioinformatics/service-ard
Language:Python7 01
nmdp-bioinformatics/wmda_mv4
WMDA matching validation code
Language:Perl