Errors installing libact in Windows with Anaconda

Question

Errors installing libact in Windows with Anaconda

Closed this issue 4 years ago · 2 comments

I'm using Anaconda and pip install. I have installed the windows C++ thing and Lapacke, and have found the lapacke.h file in my computer! But for some reason when installing it fails and says it couldn't fine the lapacke.h file! I've spent my entire day trying to figure this out.

I would be fine with not using the functions that need lapacke, but I visited this page: https://github.com/ntucllab/libact/#installation-options and I cant figure out how to set those variables to zero. When I do it in anaconda prompt I get an error message. Please help, I need to get something done with this package by tmrw night

See the attached error message

ERROR: Command errored out with exit status 1:
command: 'C:\Users\21mor\Anaconda3\python.exe' -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'C:\Users\21mor\AppData\Local\Temp\pip-install-5iwg9ffd\libact\setup.py'"'"'; file='"'"'C:\Users\21mor\AppData\Local\Temp\pip-install-5iwg9ffd\libact\setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' bdist_wheel -d 'C:\Users\21mor\AppData\Local\Temp\pip-wheel-oasf6hyg'
cwd: C:\Users\21mor\AppData\Local\Temp\pip-install-5iwg9ffd\libact
Complete output (68 lines):
Platform Detection: Linux. Link to liblapacke...
Build VarianceReduction...
Build HintSVM...
running bdist_wheel
running build
running build_py
creating build
creating build\lib.win-amd64-3.7
creating build\lib.win-amd64-3.7\libact
copying libact_init_.py -> build\lib.win-amd64-3.7\libact
creating build\lib.win-amd64-3.7\libact\base
copying libact\base\dataset.py -> build\lib.win-amd64-3.7\libact\base
copying libact\base\interfaces.py -> build\lib.win-amd64-3.7\libact\base
copying libact\base_init_.py -> build\lib.win-amd64-3.7\libact\base
creating build\lib.win-amd64-3.7\libact\models
copying libact\models\logistic_regression.py -> build\lib.win-amd64-3.7\libact\models
copying libact\models\perceptron.py -> build\lib.win-amd64-3.7\libact\models
copying libact\models\sklearn_adapter.py -> build\lib.win-amd64-3.7\libact\models
copying libact\models\svm.py -> build\lib.win-amd64-3.7\libact\models
copying libact\models_init_.py -> build\lib.win-amd64-3.7\libact\models
creating build\lib.win-amd64-3.7\libact\models\multilabel
copying libact\models\multilabel\binary_relevance.py -> build\lib.win-amd64-3.7\libact\models\multilabel
copying libact\models\multilabel\dummy_clf.py -> build\lib.win-amd64-3.7\libact\models\multilabel
copying libact\models\multilabel_init_.py -> build\lib.win-amd64-3.7\libact\models\multilabel
creating build\lib.win-amd64-3.7\libact\labelers
copying libact\labelers\ideal_labeler.py -> build\lib.win-amd64-3.7\libact\labelers
copying libact\labelers\interactive_labeler.py -> build\lib.win-amd64-3.7\libact\labelers
copying libact\labelers_init_.py -> build\lib.win-amd64-3.7\libact\labelers
creating build\lib.win-amd64-3.7\libact\query_strategies
copying libact\query_strategies\active_learning_by_learning.py -> build\lib.win-amd64-3.7\libact\query_strategies
copying libact\query_strategies\density_weighted_meta.py -> build\lib.win-amd64-3.7\libact\query_strategies
copying libact\query_strategies\density_weighted_uncertainty_sampling.py -> build\lib.win-amd64-3.7\libact\query_strategies
copying libact\query_strategies\hintsvm.py -> build\lib.win-amd64-3.7\libact\query_strategies
copying libact\query_strategies\query_by_committee.py -> build\lib.win-amd64-3.7\libact\query_strategies
copying libact\query_strategies\quire.py -> build\lib.win-amd64-3.7\libact\query_strategies
copying libact\query_strategies\random_sampling.py -> build\lib.win-amd64-3.7\libact\query_strategies
copying libact\query_strategies\uncertainty_sampling.py -> build\lib.win-amd64-3.7\libact\query_strategies
copying libact\query_strategies\variance_reduction.py -> build\lib.win-amd64-3.7\libact\query_strategies
copying libact\query_strategies_init_.py -> build\lib.win-amd64-3.7\libact\query_strategies
creating build\lib.win-amd64-3.7\libact\query_strategies\multilabel
copying libact\query_strategies\multilabel\adaptive_active_learning.py -> build\lib.win-amd64-3.7\libact\query_strategies\multilabel
copying libact\query_strategies\multilabel\binary_minimization.py -> build\lib.win-amd64-3.7\libact\query_strategies\multilabel
copying libact\query_strategies\multilabel\cost_sensitive_reference_pair_encoding.py -> build\lib.win-amd64-3.7\libact\query_strategies\multilabel
copying libact\query_strategies\multilabel\maximum_margin_reduction.py -> build\lib.win-amd64-3.7\libact\query_strategies\multilabel
copying libact\query_strategies\multilabel\multilabel_with_auxiliary_learner.py -> build\lib.win-amd64-3.7\libact\query_strategies\multilabel
copying libact\query_strategies\multilabel_init_.py -> build\lib.win-amd64-3.7\libact\query_strategies\multilabel
creating build\lib.win-amd64-3.7\libact\query_strategies\multiclass
copying libact\query_strategies\multiclass\active_learning_with_cost_embedding.py -> build\lib.win-amd64-3.7\libact\query_strategies\multiclass
copying libact\query_strategies\multiclass\expected_error_reduction.py -> build\lib.win-amd64-3.7\libact\query_strategies\multiclass
copying libact\query_strategies\multiclass\hierarchical_sampling.py -> build\lib.win-amd64-3.7\libact\query_strategies\multiclass
copying libact\query_strategies\multiclass\mdsp.py -> build\lib.win-amd64-3.7\libact\query_strategies\multiclass
copying libact\query_strategies\multiclass_init_.py -> build\lib.win-amd64-3.7\libact\query_strategies\multiclass
creating build\lib.win-amd64-3.7\libact\utils
copying libact\utils_init_.py -> build\lib.win-amd64-3.7\libact\utils
running build_ext
No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils
building 'libact.query_strategies._variance_reduction' extension
creating build\temp.win-amd64-3.7
creating build\temp.win-amd64-3.7\Release
creating build\temp.win-amd64-3.7\Release\libact
creating build\temp.win-amd64-3.7\Release\libact\query_strategies
creating build\temp.win-amd64-3.7\Release\libact\query_strategies\src
creating build\temp.win-amd64-3.7\Release\libact\query_strategies\src\variance_reduction
C:\Program Files (x86)\Microsoft Visual Studio\2019\BuildTools\VC\Tools\MSVC\14.26.28801\bin\HostX86\x64\cl.exe /c /nologo /Ox /W3 /GL /DNDEBUG /MD -IC:\Users\21mor\Anaconda3\lib\site-packages\numpy\core\include -I/usr/include/ -IC:\Users\21mor\Anaconda3\include -IC:\Users\21mor\Anaconda3\include -IC:\Program Files (x86)\Microsoft Visual Studio\2019\BuildTools\VC\Tools\MSVC\14.26.28801\include -IC:\Program Files (x86)\Windows Kits\10\include\10.0.18362.0\ucrt -IC:\Program Files (x86)\Windows Kits\10\include\10.0.18362.0\shared -IC:\Program Files (x86)\Windows Kits\10\include\10.0.18362.0\um -IC:\Program Files (x86)\Windows Kits\10\include\10.0.18362.0\winrt -IC:\Program Files (x86)\Windows Kits\10\include\10.0.18362.0\cppwinrt /Tclibact/query_strategies/src/variance_reduction/variance_reduction.c /Fobuild\temp.win-amd64-3.7\Release\libact/query_strategies/src/variance_reduction/variance_reduction.obj -std=c11
cl : Command line warning D9002 : ignoring unknown option '-std=c11'
variance_reduction.c
libact/query_strategies/src/variance_reduction/variance_reduction.c(5): fatal error C1083: Cannot open include file: 'lapacke.h': No such file or directory
error: Command "C:\Program Files (x86)\Microsoft Visual Studio\2019\BuildTools\VC\Tools\MSVC\14.26.28801\bin\HostX86\x64\cl.exe /c /nologo /Ox /W3 /GL /DNDEBUG /MD -IC:\Users\21mor\Anaconda3\lib\site-packages\numpy\core\include -I/usr/include/ -IC:\Users\21mor\Anaconda3\include -IC:\Users\21mor\Anaconda3\include -IC:\Program Files (x86)\Microsoft Visual Studio\2019\BuildTools\VC\Tools\MSVC\14.26.28801\include -IC:\Program Files (x86)\Windows Kits\10\include\10.0.18362.0\ucrt -IC:\Program Files (x86)\Windows Kits\10\include\10.0.18362.0\shared -IC:\Program Files (x86)\Windows Kits\10\include\10.0.18362.0\um -IC:\Program Files (x86)\Windows Kits\10\include\10.0.18362.0\winrt -IC:\Program Files (x86)\Windows Kits\10\include\10.0.18362.0\cppwinrt /Tclibact/query_strategies/src/variance_reduction/variance_reduction.c /Fobuild\temp.win-amd64-3.7\Release\libact/query_strategies/src/variance_reduction/variance_reduction.obj -std=c11" failed with exit status 2

ERROR: Failed building wheel for libact
Running setup.py clean for libact
Failed to build libact
Installing collected packages: libact
Running setup.py install for libact ... error
ERROR: Command errored out with exit status 1:
command: 'C:\Users\21mor\Anaconda3\python.exe' -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'C:\Users\21mor\AppData\Local\Temp\pip-install-5iwg9ffd\libact\setup.py'"'"'; file='"'"'C:\Users\21mor\AppData\Local\Temp\pip-install-5iwg9ffd\libact\setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record 'C:\Users\21mor\AppData\Local\Temp\pip-record-67f50wqt\install-record.txt' --single-version-externally-managed --compile --install-headers 'C:\Users\21mor\Anaconda3\Include\libact'
cwd: C:\Users\21mor\AppData\Local\Temp\pip-install-5iwg9ffd\libact
Complete output (68 lines):
Platform Detection: Linux. Link to liblapacke...
Build VarianceReduction...
Build HintSVM...
running install
running build
running build_py
creating build
creating build\lib.win-amd64-3.7
creating build\lib.win-amd64-3.7\libact
copying libact_init_.py -> build\lib.win-amd64-3.7\libact
creating build\lib.win-amd64-3.7\libact\base
copying libact\base\dataset.py -> build\lib.win-amd64-3.7\libact\base
copying libact\base\interfaces.py -> build\lib.win-amd64-3.7\libact\base
copying libact\base_init_.py -> build\lib.win-amd64-3.7\libact\base
creating build\lib.win-amd64-3.7\libact\models
copying libact\models\logistic_regression.py -> build\lib.win-amd64-3.7\libact\models
copying libact\models\perceptron.py -> build\lib.win-amd64-3.7\libact\models
copying libact\models\sklearn_adapter.py -> build\lib.win-amd64-3.7\libact\models
copying libact\models\svm.py -> build\lib.win-amd64-3.7\libact\models
copying libact\models_init_.py -> build\lib.win-amd64-3.7\libact\models
creating build\lib.win-amd64-3.7\libact\models\multilabel
copying libact\models\multilabel\binary_relevance.py -> build\lib.win-amd64-3.7\libact\models\multilabel
copying libact\models\multilabel\dummy_clf.py -> build\lib.win-amd64-3.7\libact\models\multilabel
copying libact\models\multilabel_init_.py -> build\lib.win-amd64-3.7\libact\models\multilabel
creating build\lib.win-amd64-3.7\libact\labelers
copying libact\labelers\ideal_labeler.py -> build\lib.win-amd64-3.7\libact\labelers
copying libact\labelers\interactive_labeler.py -> build\lib.win-amd64-3.7\libact\labelers
copying libact\labelers_init_.py -> build\lib.win-amd64-3.7\libact\labelers
creating build\lib.win-amd64-3.7\libact\query_strategies
copying libact\query_strategies\active_learning_by_learning.py -> build\lib.win-amd64-3.7\libact\query_strategies
copying libact\query_strategies\density_weighted_meta.py -> build\lib.win-amd64-3.7\libact\query_strategies
copying libact\query_strategies\density_weighted_uncertainty_sampling.py -> build\lib.win-amd64-3.7\libact\query_strategies
copying libact\query_strategies\hintsvm.py -> build\lib.win-amd64-3.7\libact\query_strategies
copying libact\query_strategies\query_by_committee.py -> build\lib.win-amd64-3.7\libact\query_strategies
copying libact\query_strategies\quire.py -> build\lib.win-amd64-3.7\libact\query_strategies
copying libact\query_strategies\random_sampling.py -> build\lib.win-amd64-3.7\libact\query_strategies
copying libact\query_strategies\uncertainty_sampling.py -> build\lib.win-amd64-3.7\libact\query_strategies
copying libact\query_strategies\variance_reduction.py -> build\lib.win-amd64-3.7\libact\query_strategies
copying libact\query_strategies_init_.py -> build\lib.win-amd64-3.7\libact\query_strategies
creating build\lib.win-amd64-3.7\libact\query_strategies\multilabel
copying libact\query_strategies\multilabel\adaptive_active_learning.py -> build\lib.win-amd64-3.7\libact\query_strategies\multilabel
copying libact\query_strategies\multilabel\binary_minimization.py -> build\lib.win-amd64-3.7\libact\query_strategies\multilabel
copying libact\query_strategies\multilabel\cost_sensitive_reference_pair_encoding.py -> build\lib.win-amd64-3.7\libact\query_strategies\multilabel
copying libact\query_strategies\multilabel\maximum_margin_reduction.py -> build\lib.win-amd64-3.7\libact\query_strategies\multilabel
copying libact\query_strategies\multilabel\multilabel_with_auxiliary_learner.py -> build\lib.win-amd64-3.7\libact\query_strategies\multilabel
copying libact\query_strategies\multilabel_init_.py -> build\lib.win-amd64-3.7\libact\query_strategies\multilabel creating build\lib.win-amd64-3.7\libact\query_strategies\multiclass
copying libact\query_strategies\multiclass\active_learning_with_cost_embedding.py -> build\lib.win-amd64-3.7\libact\query_strategies\multiclass
copying libact\query_strategies\multiclass\expected_error_reduction.py -> build\lib.win-amd64-3.7\libact\query_strategies\multiclass
copying libact\query_strategies\multiclass\hierarchical_sampling.py -> build\lib.win-amd64-3.7\libact\query_strategies\multiclass
copying libact\query_strategies\multiclass\mdsp.py -> build\lib.win-amd64-3.7\libact\query_strategies\multiclass
copying libact\query_strategies\multiclass_init_.py -> build\lib.win-amd64-3.7\libact\query_strategies\multiclass creating build\lib.win-amd64-3.7\libact\utils
copying libact\utils_init_.py -> build\lib.win-amd64-3.7\libact\utils
running build_ext
No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils
building 'libact.query_strategies._variance_reduction' extension
creating build\temp.win-amd64-3.7
creating build\temp.win-amd64-3.7\Release
creating build\temp.win-amd64-3.7\Release\libact
creating build\temp.win-amd64-3.7\Release\libact\query_strategies
creating build\temp.win-amd64-3.7\Release\libact\query_strategies\src
creating build\temp.win-amd64-3.7\Release\libact\query_strategies\src\variance_reduction
C:\Program Files (x86)\Microsoft Visual Studio\2019\BuildTools\VC\Tools\MSVC\14.26.28801\bin\HostX86\x64\cl.exe /c /nologo /Ox /W3 /GL /DNDEBUG /MD -IC:\Users\21mor\Anaconda3\lib\site-packages\numpy\core\include -I/usr/include/ -IC:\Users\21mor\Anaconda3\include -IC:\Users\21mor\Anaconda3\include -IC:\Program Files (x86)\Microsoft Visual Studio\2019\BuildTools\VC\Tools\MSVC\14.26.28801\include -IC:\Program Files (x86)\Windows Kits\10\include\10.0.18362.0\ucrt -IC:\Program Files (x86)\Windows Kits\10\include\10.0.18362.0\shared -IC:\Program Files (x86)\Windows Kits\10\include\10.0.18362.0\um -IC:\Program Files (x86)\Windows Kits\10\include\10.0.18362.0\winrt -IC:\Program Files (x86)\Windows Kits\10\include\10.0.18362.0\cppwinrt /Tclibact/query_strategies/src/variance_reduction/variance_reduction.c /Fobuild\temp.win-amd64-3.7\Release\libact/query_strategies/src/variance_reduction/variance_reduction.obj -std=c11
cl : Command line warning D9002 : ignoring unknown option '-std=c11'
variance_reduction.c
libact/query_strategies/src/variance_reduction/variance_reduction.c(5): fatal error C1083: Cannot open include file: 'lapacke.h': No such file or directory
error: Command "C:\Program Files (x86)\Microsoft Visual Studio\2019\BuildTools\VC\Tools\MSVC\14.26.28801\bin\HostX86\x64\cl.exe /c /nologo /Ox /W3 /GL /DNDEBUG /MD -IC:\Users\21mor\Anaconda3\lib\site-packages\numpy\core\include -I/usr/include/ -IC:\Users\21mor\Anaconda3\include -IC:\Users\21mor\Anaconda3\include -IC:\Program Files (x86)\Microsoft Visual Studio\2019\BuildTools\VC\Tools\MSVC\14.26.28801\include -IC:\Program Files (x86)\Windows Kits\10\include\10.0.18362.0\ucrt -IC:\Program Files (x86)\Windows Kits\10\include\10.0.18362.0\shared -IC:\Program Files (x86)\Windows Kits\10\include\10.0.18362.0\um -IC:\Program Files (x86)\Windows Kits\10\include\10.0.18362.0\winrt -IC:\Program Files (x86)\Windows Kits\10\include\10.0.18362.0\cppwinrt /Tclibact/query_strategies/src/variance_reduction/variance_reduction.c /Fobuild\temp.win-amd64-3.7\Release\libact/query_strategies/src/variance_reduction/variance_reduction.obj -std=c11" failed with exit status 2
----------------------------------------
ERROR: Command errored out with exit status 1: 'C:\Users\21mor\Anaconda3\python.exe' -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'C:\Users\21mor\AppData\Local\Temp\pip-install-5iwg9ffd\libact\setup.py'"'"'; file='"'"'C:\Users\21mor\AppData\Local\Temp\pip-install-5iwg9ffd\libact\setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record 'C:\Users\21mor\AppData\Local\Temp\pip-record-67f50wqt\install-record.txt' --single-version-externally-managed --compile --install-headers 'C:\Users\21mor\Anaconda3\Include\libact' Check the logs for full command output.

Answer 1 · 2020-06-26T03:25:13.000Z

Can you try the following commands?

export LIBACT_BUILD_VARIANCE_REDUCTION=0
export LIBACT_BUILD_HINTSVM=0
pip install libact

Answer 2 · 2020-06-26T03:28:30.000Z

I just tried that but it didn't work. I think export only works for linux? I did set instead and it worked on Windows though, thanks!