oliverSI's Stars
spotify/luigi
Luigi is a Python module that helps you build complex pipelines of batch jobs. It handles dependency resolution, workflow management, visualization etc. It also comes with Hadoop support built in.
aws-samples/aws-batch-genomics
Software sets up and runs an genome sequencing analysis workflow using AWS Batch and AWS Step Functions.
NGSeq/ViraPipe
ViraPipe is distributed Apache Spark based metagenome analytics pipeline for scalable detection of pathogens from NGS data
bitcoin/bitcoin
Bitcoin Core integration/staging tree
justjavac/free-programming-books-zh_CN
:books: 免费的计算机编程类中文书籍,欢迎投稿
sdmg15/Best-websites-a-programmer-should-visit
:link: Some useful websites for programmers.
MrAlex6204/Books
Collection of Programming, Databases, Linux & Tools Books
mymmsc/books
常用书籍
skner/iasi-pipe
nextflow data pipeline for Ion Torrent data
nmdp-bioinformatics/flow-validation
Validation workflow.
NBISweden/wgs-structvar
Whole Genome Sequenceing Structural Variation Pipelines
NationalGenomicsInfrastructure/icing
An attempt to make HLA typing from OxfordNanopore reads (MinION platform)
meissnert/nextflow-gtool
nextflow for gtool (http://www.well.ox.ac.uk/~cfreeman/software/gwas/gtool.html)
robsyme/nextflow-annotate
Workflows I find helpful for fungal genome annotation
InSilicoDB/pipeline-kallisto
Nextflow pipeline configuration for kallisto
holtgrewe/ngs_pipelines
Nextflow-based pipelines for typical NGS processing tasks
hmkim/workflow
Workflow in bioinformatics
heuermh/bdg-nextflow
Workflows implemented via Nextflow. Apache 2 licensed.
HadrienG/pipelines
:whale: A collection of nextflow pipelines
h3abionet/h3agwas
GWAS Pipeline for H3Africa
h3abionet/chipimputation
Genotype Imputation Pipeline for H3Africa
fredericlemoine/rna-pipeline
RNA-Seq pipeline with nextflow and docker
chrisquince/DESMAN
De novo Extraction of Strains from MetAgeNomes
cerebis/meta-sweeper
Parametric sweep of simulated microbial communities and metagenomic sequencing.
cbcrg/benchfam
AveraSD/nextflow-kallisto
andremrsantos/next-pipes-lghm
Nextflow Pipelines for analysis of NGS data from the LGHM bioinformatics lab
abreschi/ShortRNA-nf
evanfloden/concTree
Using Alignment Uncertainty from Many Multiple Sequence Alignments to Create Consensus Trees
SciLifeLab/NGI-ExoSeq
This pipeline has moved! Please see: