oliverSI's Stars
sanger-pathogens/companion
This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion
open2c/distiller-nf
A modular Hi-C mapping pipeline
metagenomics/MeRaGENE
jdidion/atropos
An NGS read trimming tool that is specific, sensitive, and speedy. (production)
guigolab/grape-nf
An automated RNA-seq pipeline using Nextflow
cbcrg/piper-nf
RNA mapping pipeline
alesssia/YAMP
YAMP: Yet Another Metagenomic Pipeline
vcftools/vcftools
A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.
pandas-dev/pandas
Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
scikit-learn/scikit-learn
scikit-learn: machine learning in Python
numpy/numpy
The fundamental package for scientific computing with Python.
tensorflow/tensorflow
An Open Source Machine Learning Framework for Everyone
keras-team/keras
Deep Learning for humans
samtools/samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
fritzsedlazeck/Sniffles
Structural variation caller using third generation sequencing
philres/ngmlr
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
pallets/flask
The Python micro framework for building web applications.
bottlepy/bottle
bottle.py is a fast and simple micro-framework for python web-applications.
django/django
The Web framework for perfectionists with deadlines.
bigdatagenomics/mango
A scalable genome browser. Apache 2 licensed.
bigdatagenomics/adam
ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.
GMOD/jbrowse
JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.
dasmoth/dalliance
Interactive web-based genome browser.
epam/NGB
New Genome Browser (NGB) - a Web - based NGS data viewer with unique Structural Variations (SVs) visualization capabilities, high performance, scalability, and cloud data support
SeleniumHQ/selenium
A browser automation framework and ecosystem.
chinese-poetry/chinese-poetry
The most comprehensive database of Chinese poetry 🧶最全中华古诗词数据库, 唐宋两朝近一万四千古诗人, 接近5.5万首唐诗加26万宋诗. 两宋时期1564位词人,21050首词。
danielecook/Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
pditommaso/awesome-pipeline
A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin
BioContainers/containers
Bioinformatics containers
nmdp-bioinformatics/flow
Consensus assembly and variant calling workflow.