oliverSI's Stars
IARCbioinfo/needlestack
Multi-sample somatic variant caller
joshua-d-campbell/nf-GATK_Exome_Preprocess
Adapted from the GATK best practice guide to preprocess whole exome sequencing (WES) data
KHP-Informatics/ngseasy
Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)
broadinstitute/gatk
Official code repository for GATK versions 4 and up
nextflow-io/awesome-nextflow
A curated list of nextflow based pipelines
nextflow-io/nextflow
A DSL for data-driven computational pipelines