omicsnut

omicsnut's Stars

• arq5x/lumpy-sv

  lumpy: a general probabilistic framework for structural variant discovery

  Language:C318119

• jtriley/StarCluster

  StarCluster is an open source cluster-computing toolkit for Amazon's Elastic Compute Cloud (EC2).

  Language:Python582309

• psf/requests

  A simple, yet elegant, HTTP library.

  Language:Python52.4k9.3k

• videojs/video.js

  Video.js - open source HTML5 video player

  Language:JavaScript38.3k7.5k

• d3/d3

  Bring data to life with SVG, Canvas and HTML. :bar_chart::chart_with_upwards_trend::tada:

  Language:Shell110k22.9k

• michaelbarton/genomer

  A Swiss army knife for genome projects

  Language:Ruby16

• opencb-bigdata-viz/genome-maps

  A new web-based HTML5 genome browser. Genome Maps can also browse BAM and VCFs files among other formats.

  Language:JavaScript2718

• gmcvicker/genome

  Python library and scripts for retrieval and storage of genomics data in HDF5 format

  Language:Python2612

• genome/breakdancer

  SV detection from paired end reads mapping

  Language:C++11742

• genome/pindel

  Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.

  Language:C++16590

• dib-lab/khmer

  In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

  Language:Python758295

• pallets/click

  Python composable command line interface toolkit

  Language:Python16k1.4k

• pallets/jinja

  A very fast and expressive template engine.

  Language:Python10.5k1.6k

• pallets/flask

  The Python micro framework for building web applications.

  Language:Python68.6k16.3k

• celery/celery

  Distributed Task Queue (development branch)

  Language:Python25.3k4.7k

• scrapy/scrapy

  Scrapy, a fast high-level web crawling & scraping framework for Python.

  Language:Python53.8k10.6k

• plotdevice/plotdevice

  Create 2D graphics on the Mac with Python code

  Language:JavaScript29023

• ipython/ipython

  Official repository for IPython itself. Other repos in the IPython organization contain things like the website, documentation builds, etc.

  Language:Python16.3k4.4k

• scikit-bio/scikit-bio

  scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.

  Language:Python905269

• scikit-image/scikit-image

  Image processing in Python

  Language:Python6.2k2.2k

• scikit-learn/scikit-learn

  scikit-learn: machine learning in Python

  Language:Python60.8k25.5k

• scipy/scipy

  SciPy library main repository

  Language:Python13.3k5.2k

• numpy/numpy

  The fundamental package for scientific computing with Python.

  Language:Python28.6k10.3k

• matplotlib/matplotlib

  matplotlib: plotting with Python

  Language:Python20.6k7.7k

• kivy/kivy

  Open source UI framework written in Python, running on Windows, Linux, macOS, Android and iOS

  Language:Python17.9k3.1k

• cython/cython

  The most widely used Python to C compiler

  Language:Python9.7k1.5k

• bionode/bionode

  Modular and universal bioinformatics

  Language:JavaScript31339

• wanpinglee/MOSAIK

  reference-guided aligner for next-generation sequencing technologies

  Language:C++5519

• freebayes/freebayes

  Bayesian haplotype-based genetic polymorphism discovery and genotyping.

  Language:C++798264

• pycogent/pycogent

  PyCogent: Official repository for software and unit tests

  Language:Python9152