libopenslide.so.0: cannot open shared object file: No such file or directory

[j-sieger]

Context

Issue type (bug report or feature request): bug
Operating system (e.g. Amazon linux):

OpenSlide Python version (openslide.__version__): Latest 3.4.1
OpenSlide version (openslide.__library_version__):

Details

I could same issue as been raised by people but there is no solution yet.

 File "/home/ec2-user/efs/apps/pathology/lib/configs/segmentation_nuclei.py", line 17, in <module>
    import lib.infers
  File "/home/ec2-user/efs/apps/pathology/lib/infers/__init__.py", line 12, in <module>
    from .deepedit_nuclei import DeepEditNuclei
  File "/home/ec2-user/efs/apps/pathology/lib/infers/deepedit_nuclei.py", line 16, in <module>
    from lib.transforms import AddClickGuidanced, FilterImaged, LoadImagePatchd, PostFilterLabeld
  File "/home/ec2-user/efs/apps/pathology/lib/transforms.py", line 16, in <module>
    import openslide
  File "/home/ec2-user/.local/lib/python3.9/site-packages/openslide/__init__.py", line 35, in <module>
    from openslide import lowlevel
  File "/home/ec2-user/.local/lib/python3.9/site-packages/openslide/lowlevel.py", line 60, in <module>
    _lib = cdll.LoadLibrary('libopenslide.so.0')
  File "/opt/conda/lib/python3.9/ctypes/__init__.py", line 460, in LoadLibrary
    return self._dlltype(name)
  File "/opt/conda/lib/python3.9/ctypes/__init__.py", line 382, in __init__
    self._handle = _dlopen(self._name, mode)
OSError: libopenslide.so.0: cannot open shared object file: No such file or directory

I cannot use sudo apt command as it is AMI and there is no package when i tried to run by 'yum'.
and when i install openslide with pip libraries are missing.

I am not able to find libopenslide.so.0` any where. So i am not able to find any work around also.

Please give some solution to solve this issue. may be permanent or temporary solution.

[bgilbert]

OpenSlide Python requires OpenSlide. If it's not packaged in your distribution, you'll need to install from source.