0 and -1 values in output files

Question

0 and -1 values in output files

Opened this issue 3 years ago · 3 comments

Hi,

There is a problem with all output files with pGlyco3. I get 0 and -1 for each GlycanFDR, PeptideFDR, TotalFDR. This problem also occurs in other columns e.g. GlyDecoy, PepDecoy, GlyPEP, PeptidePEP, Scan..

Answer 1 · 2022-01-19T09:20:27.000Z

What kinds of raw file did you use?

Answer 2 · 2022-01-20T11:52:22.000Z

I used raw Bruker MGF files (in pGlyco I chose mgf). (I performed DDA measurements with mixture of 3 standard glycoproteins tryptic digest on Bruker QTOF instrument with CID fragmentation mode (in pGlyco I chose HCD)).

Answer 3 · 2023-01-16T08:11:01.000Z

Bruker file is not supported yet