CMGF Reader could not open file

Question

CMGF Reader could not open file

Opened this issue 3 months ago · 4 comments

Hello, I am trying to run some raw files to find glycosylation sites. However, I keep running into an error that the CMGF reader cannot open a file on my computer that exists and is in the correct location. Is there anything I can do to fix this? Thank you!

Answer 1 · 2024-06-07T01:50:44.000Z

I think this is due to RAW data parsing error, the MGF file is not generated.

Answer 2 · 2024-06-07T15:47:44.000Z

Hello, thank you for responding! After the run (with errors) completes, an MGF file is generated and stored on my computer. When I run this MGF file on a separate run I am able to successfully get data and generate spectra on pLabel. Is there any problem with doing things this way?

Answer 3 · 2024-06-11T14:25:19.000Z

Hmm, that's wired. Searching from raw file did not run through but MGF file was generated. And search MGF file was finished

Answer 4 · 2024-09-20T12:32:39.000Z

Hi Jalew188,

Is there an update to this issue? I'm encountering the same problem (.mgf generated) but pGlyco3 says:
[pGlyco Error] Open in CMGFReader: Could not open file: C:\Users\Downloads\ID_06_HCDFT.mgf.

Cheers,
Chris