pachterlab/sircel

Improve Installation Documentation

Opened this issue · 1 comments

Hi,

Working with a user here using your software.

I think if would benefit if you provide users with an end-to-end installation example running with Anaconda:

I've worked on a solution that does that here and would be happy to incorporate this into your documentation

https://gist.github.com/marcc-hpc/b15236cf569336d29947854d88e81ae2

Kevin from MARCC (www.marcc.jhu.edu)

same here, after install execution fails due to redis missing.

/sircel/sircel
Traceback (most recent call last):
File "./sircel/sircel", line 11, in
load_entry_point('sircel==0.1.2', 'console_scripts', 'sircel')()
File "/g/funcgen/gbcs/public/software/conda/envs/sircel_25042019/lib/python3.7/site-packages/pkg_resources/init.py", line 489, in load_entry_point
return get_distribution(dist).load_entry_point(group, name)
File "/g/funcgen/gbcs/public/software/conda/envs/sircel_25042019/lib/python3.7/site-packages/pkg_resources/init.py", line 2843, in load_entry_point
return ep.load()
File "/g/funcgen/gbcs/public/software/conda/envs/sircel_25042019/lib/python3.7/site-packages/pkg_resources/init.py", line 2434, in load
return self.resolve()
File "/g/funcgen/gbcs/public/software/conda/envs/sircel_25042019/lib/python3.7/site-packages/pkg_resources/init.py", line 2440, in resolve
module = import(self.module_name, fromlist=['name'], level=0)
File "/g/funcgen/gbcs/public/software/conda/envs/sircel_25042019/lib/python3.7/site-packages/sircel-0.1.2-py3.7.egg/sircel/init.py", line 1, in
from sircel.Sircel_master import get_args, run_all
File "/g/funcgen/gbcs/public/software/conda/envs/sircel_25042019/lib/python3.7/site-packages/sircel-0.1.2-py3.7.egg/sircel/Sircel_master.py", line 7, in
from sircel.utils import IO_utils, Plot_utils
File "/g/funcgen/gbcs/public/software/conda/envs/sircel_25042019/lib/python3.7/site-packages/sircel-0.1.2-py3.7.egg/sircel/utils/init.py", line 2, in
from sircel.utils.IO_utils import *
File "/g/funcgen/gbcs/public/software/conda/envs/sircel_25042019/lib/python3.7/site-packages/sircel-0.1.2-py3.7.egg/sircel/utils/IO_utils.py", line 13, in
import redis
ModuleNotFoundError: No module named 'redis'