Pinned Repositories
AiBST_Nov_2022
Repository for the AiBST course (November 2022)
as_analysis
A complete Snakemake pipeline for detecting allele specific expression in RNA-seq
awesome-chatgpt
⚡ Everything about ChatGPT
awesome-compbio-chatgpt
An awesome repository of community-curated applications of ChatGPT and other LLMs im computational biology
biochatter
Backend library for conversational AI in biomedicine
cancer_prostate
Multiomic Data Analytics Integration in Prostate Cancer
cellassign
Automated, probabilistic assignment of cell types in scRNA-seq data
Code-of-scRNA-in-osteoarthritis
We screen marker gene, cellular molecular function and potential miRNA for osteoarthritis osteoblasts based on single-cell RNA sequencing data, and in addition to this, we have identified osteoarthritis osteoblast subpopulations and genetic signatures to explore the role of osteoblasts in the pathogenesis of osteoarthritis at the genetic level.Now
CryptoSex_manuscript
Code and data for Tandel et al. manuscript on Cryptosporidum pavum sexual differentiation
DATA_SCIENCE_IN_BIOLOGY
projects using galaxy, python, linux command line to analyze sequencing data
pageneck's Repositories
pageneck/AiBST_Nov_2022
Repository for the AiBST course (November 2022)
pageneck/as_analysis
A complete Snakemake pipeline for detecting allele specific expression in RNA-seq
pageneck/awesome-chatgpt
⚡ Everything about ChatGPT
pageneck/awesome-compbio-chatgpt
An awesome repository of community-curated applications of ChatGPT and other LLMs im computational biology
pageneck/biochatter
Backend library for conversational AI in biomedicine
pageneck/cancer_prostate
Multiomic Data Analytics Integration in Prostate Cancer
pageneck/cellassign
Automated, probabilistic assignment of cell types in scRNA-seq data
pageneck/Code-of-scRNA-in-osteoarthritis
We screen marker gene, cellular molecular function and potential miRNA for osteoarthritis osteoblasts based on single-cell RNA sequencing data, and in addition to this, we have identified osteoarthritis osteoblast subpopulations and genetic signatures to explore the role of osteoblasts in the pathogenesis of osteoarthritis at the genetic level.Now
pageneck/DATA_SCIENCE_IN_BIOLOGY
projects using galaxy, python, linux command line to analyze sequencing data
pageneck/Datasets
pageneck/django-todo-app
This is an app for managing your todos
pageneck/gatk_variant_calling
This pipleline will run from QC to Variant annotation of Next Generation Sequencing Data
pageneck/gene-and-variant-curation-tools
ClinGen's gene and variant curation interfaces (GCI & VCI). Developed by Stanford ClinGen team.
pageneck/Helminths_2021
pageneck/lcwgs-guide-tutorial
pageneck/lilikoi2
pageneck/loftee
pageneck/mixOmics
Development repository for the Bioconductor package 'mixOmics '
pageneck/ml-class-assignments
Programming Exercises on http://ml-class.org
pageneck/my-CV
This is my online CV
pageneck/page.jekyllrb.github.io
pageneck/portfolio.github.org
This is a tutorial on how to build a blog
pageneck/rvtests
Rare variant test software for next generation sequencing data
pageneck/Scerte
pageneck/scflow
Single cell pipelines
pageneck/SECRETS
This is a node js secret app for keeping and sharing little secrets.The purpose is to improve authentication of the app
pageneck/shaw_repo.github.io
pageneck/single-myonucleus
pageneck/SnpEff
pageneck/vscode-chatgpt
An unofficial Visual Studio Code - OpenAI ChatGPT integration