Pinned Repositories
AiBST_Nov_2022
Repository for the AiBST course (November 2022)
as_analysis
A complete Snakemake pipeline for detecting allele specific expression in RNA-seq
awesome-chatgpt
⚡ Everything about ChatGPT
awesome-compbio-chatgpt
An awesome repository of community-curated applications of ChatGPT and other LLMs im computational biology
biochatter
Backend library for conversational AI in biomedicine
cancer_prostate
Multiomic Data Analytics Integration in Prostate Cancer
cellassign
Automated, probabilistic assignment of cell types in scRNA-seq data
Code-of-scRNA-in-osteoarthritis
We screen marker gene, cellular molecular function and potential miRNA for osteoarthritis osteoblasts based on single-cell RNA sequencing data, and in addition to this, we have identified osteoarthritis osteoblast subpopulations and genetic signatures to explore the role of osteoblasts in the pathogenesis of osteoarthritis at the genetic level.Now
CryptoSex_manuscript
Code and data for Tandel et al. manuscript on Cryptosporidum pavum sexual differentiation
DATA_SCIENCE_IN_BIOLOGY
projects using galaxy, python, linux command line to analyze sequencing data
pageneck's Repositories
pageneck/scRNA_pre_process
Processing scRNA-seq data with kallisto|bustools pipeline
pageneck/CryptoSex_manuscript
Code and data for Tandel et al. manuscript on Cryptosporidum pavum sexual differentiation
pageneck/OAStratification
Stratification of Knee Osteoarthritis: Two major patient subgroups identified by genome wide expression analysis of articular cartilage.
pageneck/DNA-Sequencing-FA-FASTQ-Python