pcastellanoescuder
Bioinformatician at Duke University. Multi-omics | Machine Learning | AI
Duke Molecular Physiology InstituteDurham, NC, USA
Pinned Repositories
axolotr
The axolotr package provides a unified interface for interacting with various Language Model APIs, including OpenAI's GPT, Google's Gemini, Anthropic's Claude, and Groq's API. It allows users to easily switch between different LLMs and leverage their capabilities for a wide range of natural language processing tasks.
gaudi
🧩 Group Aggregation via UMAP (multi-omics) Data Integration
umap_multiomics_integration
📊 Multi-omics Integration Benchmarking: This repository benchmarks GAUDI against state-of-the-art multi-omics integration methods for cancer research
fobitools
:package: Tools for Manipulating FOBI Ontology
FoodBiomarkerOntology
:rocket: Food-Biomarker Ontology defines the relationships between foods and their associated metabolites (biomarkers) through a formal ontology
Good_Practices_in_Software_Development
Presentation about "good practices" in (statistical) software development
Lheuristic
A shiny app to select L-shaped genes using a heuristic algorithm
POMA
:package: Omics Data Analysis Tools
POMAcounts
:apple: Web-based Application for Exploratory and Statistical Analysis of Mass Spectrometry Spectral Counts Data
POMAShiny
:apple: Web-based User-friendly Workflow for Metabolomics and Proteomics Data Analysis
pcastellanoescuder's Repositories
pcastellanoescuder/POMAShiny
:apple: Web-based User-friendly Workflow for Metabolomics and Proteomics Data Analysis
pcastellanoescuder/FoodBiomarkerOntology
:rocket: Food-Biomarker Ontology defines the relationships between foods and their associated metabolites (biomarkers) through a formal ontology
pcastellanoescuder/POMA
:package: Omics Data Analysis Tools
pcastellanoescuder/Good_Practices_in_Software_Development
Presentation about "good practices" in (statistical) software development
pcastellanoescuder/POMAcounts
:apple: Web-based Application for Exploratory and Statistical Analysis of Mass Spectrometry Spectral Counts Data
pcastellanoescuder/fobitools
:package: Tools for Manipulating FOBI Ontology
pcastellanoescuder/Lheuristic
A shiny app to select L-shaped genes using a heuristic algorithm
pcastellanoescuder/POMA_slides_useR2019
Xaringan slides for my talk in useR!2019
pcastellanoescuder/autoEDA-resources
A list of software and papers related to automatic and fast Exploratory Data Analysis
pcastellanoescuder/computational_biology_handbook
pcastellanoescuder/Covid19Explorer
Shiny Application for Exploring Multivariate COVID-19 Data
pcastellanoescuder/ddh
Coming up with better ideas...
pcastellanoescuder/FOBI_slides_IFOW2020
FOBI slides for the Integrated Food Ontology Workshop 2020
pcastellanoescuder/fobitoolsGUI
:mag_right: Web-based Tool for Interacting with FOBI Ontology
pcastellanoescuder/lassoloops
Lasso + Bootstrap methods for predictive modeling
pcastellanoescuder/OBOFoundry.github.io
Metadata and website for the Open Bio Ontologies Foundry Ontology Registry
pcastellanoescuder/package_developement_slides
pcastellanoescuder/pcastellanoescuder
Yet another GitHub profile README
pcastellanoescuder/pcastellanoescuder.github.io
pcastellanoescuder/PCEmisc
pcastellanoescuder/poma_shiny_docker
:whale: This repository contains the Docker image of POMA shiny app
pcastellanoescuder/POMA_slides_BioC2021
pcastellanoescuder/POMA_slides_CBRG2022
pcastellanoescuder/POMA_slides_EuroBioc2020
POMA slides for the EuroBioc2020 meeting
pcastellanoescuder/POMAShiny_slides_BioCAsia2020
POMAShiny slides for the BioC Asia 2020 conference
pcastellanoescuder/pum
Shiny app to visualize Florence Nightingale data in Crimean War
pcastellanoescuder/purl.obolibrary.org
A new system for managing OBO PURLs
pcastellanoescuder/shiny_volcano
Shiny app example of an interactive Volcano Plot
pcastellanoescuder/thesisdown
An updated R Markdown thesis template using the bookdown package
pcastellanoescuder/tidybiology
The Tidybiology package containing datasets and utility functions for learning