pcpLiu/DeepSeqPan

How to evaluate/ test?

Closed this issue · 2 comments

saskra commented

Me again. Training model on own data finally done. But how to use it on my own test data set? Seems there are more hard coded parts to change in the source code than I have found until now...

pcpLiu commented

Hey @saskra . Glad hearing that you finished the training.

If you just want to test on a list of input, you can write a simple script referring following codes:

  1. Encode peptide and HLA sequence. this function and this one
  2. Load model: here
  3. Eval: here

Also, I will upload a script to support this testing later this week. Hope it helps

pcpLiu commented

Hi @saskra

Sorry for late update. Just added a simple testing script. If you still need it, you can try.
The usage is listed here

  • 👍1