Pinned Repositories
bioformats2raw
Bio-Formats whole slide imaging to raw format converter
CAVEdeployment
cloud-files
Threaded Python and CLI client library for AWS S3, Google Cloud Storage (GCS), in-memory, and the local filesystem.
cloud-volume
A serverless client for reading and writing Neuroglancer Precomputed volumes both locally and on cloud services.
daisy
Block-wise task scheduling for large nD volumes.
n5ng
Small python proxy to serve n5 data in neuroglancer precomputed format
neuroglancer-example-notebooks
3DEM Neuroglancer Workshop
render
Render transformed image tiles
transform_service
Small web service to transform fly data
vizrelay
Simple flask app to link render status pages to visualization.
perlman's Repositories
perlman/n5ng
Small python proxy to serve n5 data in neuroglancer precomputed format
perlman/neuroglancer-example-notebooks
3DEM Neuroglancer Workshop
perlman/render
Render transformed image tiles
perlman/transform_service
Small web service to transform fly data
perlman/vizrelay
Simple flask app to link render status pages to visualization.
perlman/bioformats2raw
Bio-Formats whole slide imaging to raw format converter
perlman/CAVEdeployment
perlman/cloud-files
Threaded Python and CLI client library for AWS S3, Google Cloud Storage (GCS), in-memory, and the local filesystem.
perlman/cloud-volume
A serverless client for reading and writing Neuroglancer Precomputed volumes both locally and on cloud services.
perlman/daisy
Block-wise task scheduling for large nD volumes.
perlman/FANC_auto_recon
Code for processing and analyzing the automated reconstruction of the Lee lab's Female Adult Nerve Cord EM dataset
perlman/meeting-notes
Notes from weekly napari meetings
perlman/n5-aws-s3
N5 library implementation using Amazon Web Services S3 backend.
perlman/n5-viewer
BigDataViewer-based tool for visualizing multichannel multiscale N5 datasets.
perlman/napari
napari: a PyQt5- and VisPy-based ndarray visualization tool
perlman/neuroglancer
WebGL-based viewer for volumetric data
perlman/NeuroglancerJsonServer
NeuroglancerJsonServer
perlman/ng-extend
perlman/ome-zarr-py
Experimental implementation of images in Zarr files.
perlman/ome2024-ngff-challenge
Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data
perlman/perlman
perlman/phidgets-indigo
perlman/PointMatchExplorer
Point Match Explorer for FlyTEM
perlman/PyChunkedGraph
Chunked graph structure used for human proof-reading in Python
perlman/pymaid
Python library to interface with CATMAID servers. Fully interoperable with navis.
perlman/render-python
A python interface for render
perlman/scikit-image
Image processing in Python
perlman/vispy
Main repository for Vispy