petermchale
Wrangling genomics data | Developing genomics software
University of UtahSalt Lake City, Utah
Pinned Repositories
diffusion
Implementation of a Denoising Diffusion Probabilistic Model with some mathematical background.
fine-tune-llm
Fine-tune open-source LLM on an instruction dataset
gnn
A collection of projects using graph neural networks implemented from first principles, and using the PyTorch Geometric library
llm-powered-applications
Orchestrating the interaction between users and Large Language Models
math105A
Numerical analysis course in Python
math9
Introductory Python course for math students
nucleotide-transformer
Using an LLM to discover the genetic causes of rare disease
pong_RL
Training a simple AI using the policy-gradient approach to Reinforcement Learning.
tumor
A spatial Markov model of agents making decisions based upon their surroundings. Stochastic optimization via Markov Chain Monte Carlo (Metropolis-Hastings algorithm). Interactive visualization of data using the JavaScript library D3.
petermchale's Repositories
petermchale/math9
Introductory Python course for math students
petermchale/predict_customer_response
Machine-learning models to predict whether customers respond to a marketing campaign
petermchale/find_phone
Object detection algorithm
petermchale/mutation_accumulation
C++ template library for Monte Carlo simulations of mutation accumulation in stem cells
petermchale/jupyter_notebook_intro
All you need to get started with Jupyter Notebooks
petermchale/Math2B
Lower-division calculus class
petermchale/modeling_mutation_counts_using_neural_networks
Modeling mutation count data using deep learning
petermchale/yeast_bioinformatics
Bioinformatic analysis of transcription factor binding and nucleosome positioning in yeast