PFMC assessments
Repositories related to stock assessments for the Pacific Fishery Management Council
Pinned Repositories
AgeingError
Wrapper for tool to estimate ageing error given double-reads of hard structures (e.g., otoliths)
Assessment_Class
2025 UW Stock assessment class
canary_2023
geostatistical_delta-GLMM
Tool for geostatistical analysis of survey data, for use when estimating an index of abundance
nwfscDeltaGLM
Bayesian stratified delta-GLMM software for standardizing fishery-independent index data for U.S. West Coast
nwfscDiag
Tool to run diagnostics for U.S. West Coast groundfish stock assessments using Stock Synthesis
nwfscSurvey
Tool to pull and process NWFSC West Coast groundfish survey data for use in PFMC groundfish stock assessments
PacFIN.Utilities
R code to manipulate data from the PacFIN database for assessments
sa4ss
Generate a stock assessment document from Stock Synthesis output
shortspine_thornyhead_2023
2023 West Coast stock assessment for shortspine thornyhead
PFMC assessments's Repositories
pfmc-assessments/geostatistical_delta-GLMM
Tool for geostatistical analysis of survey data, for use when estimating an index of abundance
pfmc-assessments/nwfscDeltaGLM
Bayesian stratified delta-GLMM software for standardizing fishery-independent index data for U.S. West Coast
pfmc-assessments/sa4ss
Generate a stock assessment document from Stock Synthesis output
pfmc-assessments/nwfscSurvey
Tool to pull and process NWFSC West Coast groundfish survey data for use in PFMC groundfish stock assessments
pfmc-assessments/AgeingError
Wrapper for tool to estimate ageing error given double-reads of hard structures (e.g., otoliths)
pfmc-assessments/Assessment_Class
2025 UW Stock assessment class
pfmc-assessments/PacFIN.Utilities
R code to manipulate data from the PacFIN database for assessments
pfmc-assessments/shortspine_thornyhead_2023
2023 West Coast stock assessment for shortspine thornyhead
pfmc-assessments/canary_2023
pfmc-assessments/VASTWestCoast
VAST for the NWFSC West Coast data
pfmc-assessments/california-data
This serves as a space to discuss data related to stock assessments for California.
pfmc-assessments/copper_rockfish_2023
pfmc-assessments/indexwc
Estimate indices of abundance for west coast fish species
pfmc-assessments/lingcod
pfmc-assessments/pfmc_assessment_handbook
PFMC Groundfish Assessment Best Practices Handbook
pfmc-assessments/nwfscMapping
Mapping code for NWFSC data
pfmc-assessments/PEPtools
Tools for those in the Population Ecology Program of the NWFSC
pfmc-assessments/sablefish
Status of sablefish as reported to the Pacific Fisheries Management Council
pfmc-assessments/nwfscDiag
Tool to run diagnostics for U.S. West Coast groundfish stock assessments using Stock Synthesis
pfmc-assessments/nwfscDiscard
Code to summarize discard rates and totals from the West Coast Groundfish Observer Program
pfmc-assessments/.github
pfmc-assessments/CA_quillback_rockfish_2025
Quillback rockfish assessment for California in 2025
pfmc-assessments/indicators
Environmental indicators used to inform estimates with PFMC groundfish stock assessments.
pfmc-assessments/petrale
Petrale Sole stock assessment for the U.S. West Coast
pfmc-assessments/PFMC-SIS
Getting assessment results into the Species Information System
pfmc-assessments/quillback_rockfish_2021
pfmc-assessments/rebuilder
pfmc-assessments/RecFIN
Working with recreational data for the US West Coast
pfmc-assessments/sablefish_2025
Assessment repository for the 2025 assessment of sablefish off the West Coast of the U.S.
pfmc-assessments/yellowtail_2025
Assessment repository for the 2025 assessment of the northern stock of Yellowtail rockfish off the West Coast of the U.S.