Shorten QC messages - remove repeated terms
Closed this issue · 2 comments
Suggested enhancement: edit QC messages to remove repeated terms.
For warnings:
"WARNING: Low Coverage: Low coverage for all tiles (18.200 < 20 expected)" -> change to: "WARNING: Low coverage for all tiles (18.200 < 20 expected)"
For missing tiles:
"FAIL: Missing Tiles Error 1: 11.11% missing tiles; more than 5.00% missing tiles threshold. Low coverage depth (19.1 < 20.0 expected); you may need more WGS data." -> change to: "FAIL: 11.11% missing tiles > 5.00% QC setting. Low coverage depth (19.1 < 20.0 expected); you may need more WGS data."
For mixed samples:
"FAIL: Mixed Sample Error 2: Mixed subtype detected. Positive and negative tiles detected for the same target site "2417681" for subtype "1"." -> change to: "FAIL: Mixed subtype detected. Positive and negative tiles detected for the same target site "2417681" for subtype "1"."
Awesome, thanks Peter!