Add PointFinder "Required_mut" column to pointfinder.tsv results
apetkau opened this issue · 1 comments
apetkau commented
There is a column, Required_mut, in the PointFinder database file resistens-overview.txt that lists mutations required to classify as resistant: https://bitbucket.org/genomicepidemiology/pointfinder_db/src/master/salmonella/resistens-overview.txt
We should add Required_mut to the pointfinder.tsv results from StarAMR (named something like CGE_Required_mut.