Can we concat haplotypes.fasta and haplotigs.fasta sequences ?

[jnarayan81]

Is this alright to concat collapsed and phase fasta sequence to create a pseudo haploid genome ?

cat test.A_haplotigs.fasta  test.collapsed_haplotypes.fasta > Haploid_A.fa
cat test.B_haplotigs.fasta  test.collapsed_haplotypes.fasta > Haploid_B.fa

Note: These files are created at mincing stage of Falcon-Phase

[skingan]

The contigs will be highly fragmented, but all the material for a pseudohaploid genome is contained in those files.