plazi/ontologies

model drosophilid example using FlyBase trait terms

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tcatapano commented

An example treatment:

http://treatment.plazi.org/id/0610DE63-4A62-5801-C11B-0C8AD642A55A

FlyBase vocabularies:

http://flybase.org/static_pages/termlink/termlink.html

Cant seem to find the actual formal vocabulary/ontology files, however

myrmoteras commented

http://flybase.org/static_pages/feature/previous/articles/2014_05/DAO_updates.html

http://flybase.org/wiki/FlyBase:Gene_Ontology_(GO)_Annotation

if you think there is an annotated treatment on our site, then this does not exist. This is up to you, @gsautter, etc to accomplish, and essentially will be part of the coming proposal(s).

gsautter commented

As usual, when I built the marine trait and HAO based tagger, I actually built a tagger that can take in any ontology term list in a CSV or tab separated format and create a tagger from that ... meaning to say: not all too bit a deal, maybe safe for the creation of the CSV, depending on what format the ontology comes in.

tcatapano commented

Thanks, @gsautter. If I can locate a csv/tsv version of this vocabulary we can mark up a sample using gg, but a marked up version is not necessary at this stage.

gsautter commented

The OBO versions look OK for CSV conversion, think I've done something like that before ... is this the current version: http://sourceforge.net/p/fbcv/code-0/HEAD/tree/releases/dpo.obo ? Or is there even a representation you would deem easier to convert?

github-actions commented

This issue is stale because it has been open for 90 days with no activity.

github-actions commented

This issue was closed because it has been inactive for 30 days since being marked as stale.