build error when run pip install .

Question

build error when run pip install .

zhangli-jerry opened this issue 4 years ago · 1 comments

I used aws [Deep Learning AMI (Ubuntu 16.04) Version 32.0 (ami-019034fd7c36a9148)].
I can not find out the reason from the following error message.

` Building wheel for dirt (setup.py) ... error
ERROR: Command errored out with exit status 1:
command: /home/ubuntu/anaconda3/envs/tensorflow_p27/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-req-build-EAVVa3/setup.py'"'"'; file='"'"'/tmp/pip-req-build-EAVVa3/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-f2xW7Z --python-tag cp27
cwd: /tmp/pip-req-build-EAVVa3/
Complete output (109 lines):
running bdist_wheel
running build
-- The CXX compiler identification is GNU 5.4.0
-- The CUDA compiler identification is NVIDIA 10.0.130
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Check for working CUDA compiler: /usr/local/cuda/bin/nvcc
-- Check for working CUDA compiler: /usr/local/cuda/bin/nvcc -- works
-- Detecting CUDA compiler ABI info
-- Detecting CUDA compiler ABI info - done
-- Found OpenGL: /usr/lib/x86_64-linux-gnu/libOpenGL.so found components: OpenGL EGL
WARNING:tensorflow:From /home/ubuntu/anaconda3/envs/tensorflow_p27/lib/python2.7/site-packages/tensorflow_core/init.py:1473: The name tf.estimator.inputs is deprecated. Please use tf.compat.v1.estimator.inputs instead.

WARNING:tensorflow:From /home/ubuntu/anaconda3/envs/tensorflow_p27/lib/python2.7/site-packages/tensorflow_core/init.py:1473: The name tf.estimator.inputs is deprecated. Please use tf.compat.v1.estimator.inputs instead.

-- Configuring done
-- Generating done
-- Build files have been written to: /tmp/pip-req-build-EAVVa3/build
Scanning dependencies of target rasterise
[ 14%] Building CXX object CMakeFiles/rasterise.dir/rasterise_egl.cpp.o
[ 28%] Building CUDA object CMakeFiles/rasterise.dir/rasterise_egl.cu.o
[ 42%] Building CXX object CMakeFiles/rasterise.dir/rasterise_grad_egl.cpp.o
[ 57%] Building CUDA object CMakeFiles/rasterise.dir/rasterise_grad_egl.cu.o
In file included from /tmp/pip-req-build-EAVVa3/csrc/rasterise_egl.cpp:24:0:
/home/ubuntu/anaconda3/envs/tensorflow_p27/lib/python2.7/site-packages/tensorflow_core/include/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceCuda.h:3:2: warning: #warning "Deprecated header file, please either include the main Eigen/CXX11/Tensor header or the respective TensorDeviceGpu.h file" [-Wcpp]
#warning "Deprecated header file, please either include the main Eigen/CXX11/Tensor header or the respective TensorDeviceGpu.h file"
^
In file included from /tmp/pip-req-build-EAVVa3/csrc/rasterise_grad_egl.cpp:22:0:
/home/ubuntu/anaconda3/envs/tensorflow_p27/lib/python2.7/site-packages/tensorflow_core/include/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceCuda.h:3:2: warning: #warning "Deprecated header file, please either include the main Eigen/CXX11/Tensor header or the respective TensorDeviceGpu.h file" [-Wcpp]
#warning "Deprecated header file, please either include the main Eigen/CXX11/Tensor header or the respective TensorDeviceGpu.h file"
^
/home/ubuntu/anaconda3/envs/tensorflow_p27/lib/python2.7/site-packages/tensorflow_core/include/absl/strings/string_view.h(495): warning: expression has no effect

/home/ubuntu/anaconda3/envs/tensorflow_p27/lib/python2.7/site-packages/tensorflow_core/include/absl/strings/string_view.h(495): warning: expression has no effect

/home/ubuntu/anaconda3/envs/tensorflow_p27/lib/python2.7/site-packages/tensorflow_core/include/absl/types/optional.h(425): warning: expression has no effect
detected during instantiation of "const T &absl::optional::operator*() const & [with T=stream_executor::dnn::AlgorithmDesc]"
/home/ubuntu/anaconda3/envs/tensorflow_p27/lib/python2.7/site-packages/tensorflow_core/include/tensorflow/stream_executor/dnn.h(802): here

/home/ubuntu/anaconda3/envs/tensorflow_p27/lib/python2.7/site-packages/tensorflow_core/include/absl/types/optional.h(425): warning: expression has no effect
detected during instantiation of "const T &absl::optional::operator*() const & [with T=size_t]"
/home/ubuntu/anaconda3/envs/tensorflow_p27/lib/python2.7/site-packages/tensorflow_core/include/tensorflow/stream_executor/dnn.h(856): here

make[2]: *** No rule to make target '/usr/lib/x86_64-linux-gnu/libEGL.so', needed by 'CMakeFiles/rasterise.dir/cmake_device_link.o'. Stop.
make[2]: *** Waiting for unfinished jobs....
[ 71%] Building CXX object CMakeFiles/rasterise.dir/shaders.cpp.o
/home/ubuntu/anaconda3/envs/tensorflow_p27/lib/python2.7/site-packages/tensorflow_core/include/absl/strings/string_view.h(495): warning: expression has no effect

/home/ubuntu/anaconda3/envs/tensorflow_p27/lib/python2.7/site-packages/tensorflow_core/include/absl/strings/string_view.h(495): warning: expression has no effect

/home/ubuntu/anaconda3/envs/tensorflow_p27/lib/python2.7/site-packages/tensorflow_core/include/absl/types/optional.h(425): warning: expression has no effect
detected during instantiation of "const T &absl::optional::operator*() const & [with T=stream_executor::dnn::AlgorithmDesc]"
/home/ubuntu/anaconda3/envs/tensorflow_p27/lib/python2.7/site-packages/tensorflow_core/include/tensorflow/stream_executor/dnn.h(802): here

/home/ubuntu/anaconda3/envs/tensorflow_p27/lib/python2.7/site-packages/tensorflow_core/include/absl/types/optional.h(425): warning: expression has no effect
detected during instantiation of "const T &absl::optional::operator*() const & [with T=size_t]"
/home/ubuntu/anaconda3/envs/tensorflow_p27/lib/python2.7/site-packages/tensorflow_core/include/tensorflow/stream_executor/dnn.h(856): here

/home/ubuntu/anaconda3/envs/tensorflow_p27/lib/python2.7/site-packages/tensorflow_core/include/absl/types/optional.h(425): warning: expression has no effect
detected during instantiation of "const T &absl::optional::operator*() const & [with T=stream_executor::dnn::AlgorithmDesc]"
/home/ubuntu/anaconda3/envs/tensorflow_p27/lib/python2.7/site-packages/tensorflow_core/include/tensorflow/stream_executor/dnn.h(802): here

/home/ubuntu/anaconda3/envs/tensorflow_p27/lib/python2.7/site-packages/tensorflow_core/include/absl/types/optional.h(425): warning: expression has no effect
detected during instantiation of "const T &absl::optional::operator*() const & [with T=size_t]"
/home/ubuntu/anaconda3/envs/tensorflow_p27/lib/python2.7/site-packages/tensorflow_core/include/tensorflow/stream_executor/dnn.h(856): here

CMakeFiles/Makefile2:72: recipe for target 'CMakeFiles/rasterise.dir/all' failed
make[1]: * [CMakeFiles/rasterise.dir/all] Error 2
Makefile:83: recipe for target 'all' failed
make: * [all] Error 2
Traceback (most recent call last):
File "", line 1, in
File "/tmp/pip-req-build-EAVVa3/setup.py", line 50, in
'Programming Language :: Python :: 3.7',
File "/home/ubuntu/anaconda3/envs/tensorflow_p27/lib/python2.7/site-packages/setuptools/init.py", line 145, in setup
return distutils.core.setup(**attrs)
File "/home/ubuntu/anaconda3/envs/tensorflow_p27/lib/python2.7/distutils/core.py", line 151, in setup
dist.run_commands()
File "/home/ubuntu/anaconda3/envs/tensorflow_p27/lib/python2.7/distutils/dist.py", line 953, in run_commands
self.run_command(cmd)
File "/home/ubuntu/anaconda3/envs/tensorflow_p27/lib/python2.7/distutils/dist.py", line 972, in run_command
cmd_obj.run()
File "/home/ubuntu/anaconda3/envs/tensorflow_p27/lib/python2.7/site-packages/wheel/bdist_wheel.py", line 192, in run
self.run_command('build')
File "/home/ubuntu/anaconda3/envs/tensorflow_p27/lib/python2.7/distutils/cmd.py", line 326, in run_command
self.distribution.run_command(command)
File "/home/ubuntu/anaconda3/envs/tensorflow_p27/lib/python2.7/distutils/dist.py", line 972, in run_command
cmd_obj.run()
File "/tmp/pip-req-build-EAVVa3/setup.py", line 24, in run
build_csrc()
File "/tmp/pip-req-build-EAVVa3/setup.py", line 20, in build_csrc
subprocess.check_call(['make', '-j{}'.format(build_cpus)], cwd=build_path)
File "/home/ubuntu/anaconda3/envs/tensorflow_p27/lib/python2.7/subprocess.py", line 190, in check_call
raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['make', '-j4']' returned non-zero exit status 2

ERROR: Failed building wheel for dirt
`

Answer 1 · 2020-08-17T05:45:33.000Z

I found out the problem:
make[2]: *** No rule to make target '/usr/lib/x86_64-linux-gnu/libEGL.so', needed by 'CMakeFiles/rasterise.dir/cmake_device_link.o'. Stop.

To fix the problem, I updated the symbolic link as follows:( Thanks @elect for the solution)
sudo rm /usr/lib/x86_64-linux-gnu/libEGL.so
sudo ln /usr/lib/x86_64-linux-gnu/libEGL.so.1 /usr/lib/x86_64-linux-gnu/libEGL.so