Use the SSM API along with the EC2 API
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ponkio-o commented
Summary
Should to use Systems Manager API to find EC2 instances. Because, EC2 instances that can use session-manager are not always found use with EC2 API.
Solution
Use the DescribeInstanceInformation
along with the EC2 API.
https://docs.aws.amazon.com/systems-manager/latest/APIReference/API_DescribeInstanceInformation.html
This API can get AssociationStatus.
https://docs.aws.amazon.com/systems-manager/latest/APIReference/API_InstanceInformation.html#systemsmanager-Type-InstanceInformation-AssociationStatus