Pinned Repositories
arrayqueues
Multiprocessing queues for numpy arrays using shared memory
bouter
Dragomir-et-al-2019-modelfit
Repository for the code accompanying the Dragmorir et al 2019. publication
fimpy
flammkuchen
Flexible HDF5 saving/loading library forked from deepdish (University of Chicago) and maintained by the Portugues lab
sashimi
Lightsheet control
split_dataset
A minimal package for saving and reading large HDF5-based chunked arrays.
stytra
A modular package to control stimulation and track behaviour
Stytra-with-DeepLabCut
Example of stytra usage without zebrafish
VolumeRegistration.jl
Subpixel volumetric registration
Portugues lab's Repositories
portugueslab/arrayqueues
Multiprocessing queues for numpy arrays using shared memory
portugueslab/stytra
A modular package to control stimulation and track behaviour
portugueslab/flammkuchen
Flexible HDF5 saving/loading library forked from deepdish (University of Chicago) and maintained by the Portugues lab
portugueslab/split_dataset
A minimal package for saving and reading large HDF5-based chunked arrays.
portugueslab/VolumeRegistration.jl
Subpixel volumetric registration
portugueslab/Stytra-with-DeepLabCut
Example of stytra usage without zebrafish
portugueslab/lightparam
Another attempt at parameters in Python
portugueslab/napari-hdf5
portugueslab/brunoise
2-photon scanning software in Python
portugueslab/bouter
portugueslab/fimpy
portugueslab/napari-split-dataset
hdf5/split-dataset file reader for napari
portugueslab/PaddedBlocks.jl
Utilities for generating blocks for processing data, with optional padding
portugueslab/sashimi
Lightsheet control
portugueslab/hackathon2021
Folder with the material of the Portugues lab hackaton 2021
portugueslab/scopecuisine
portugueslab/cellfinder
Automated 3D cell detection and registration of whole-brain images
portugueslab/Clustering-Pipeline
portugueslab/ec-code
Code for the analysis of eurydendroid cells data
portugueslab/Graph-analysis-michael
portugueslab/Jafari-et-al-2020
Code and sample data used for parts of the analysis in the paper Jafari et al 2020
portugueslab/lotr
Motion integration analysis
portugueslab/lsmlsda2020
Repo for students of the class 'Large Scale Modelling and Large Scale Data Analysis'
portugueslab/MakieAddons.jl
Utility functions for Makie plots
portugueslab/markov-et-al
Scripts for the Markov et al paper on motor adaptation
portugueslab/Parameters.jl
Types with default field values, keyword constructors and (un-)pack macros
portugueslab/Prat_et_al
portugueslab/SplitDataset.jl
Reading and writing of SplitDatasets in Julia
portugueslab/theknights
portugueslab/xiao_et_al
Stytra stimuli and analysis notebooks for Xiao et al, 2022