Current cmsearch missing required options

Question

Current cmsearch missing required options

Opened this issue 9 years ago · 3 comments

Using the latest Infernal package leads to an error from RNIE due to the "--fil-no-qdb" option not being supported. Would suggest updating docs to highlight specific version of Infernal to use or update Perl script to handle these changes.

Answer 1 · 2015-11-03T00:51:09.000Z

Thanks for the reminder Thomas.
I've been meaning to update the docs for a while. Unfortunately I haven't got around to reparameterising for the latest versions of Infernal.

Answer 2 · 2023-03-03T10:38:50.000Z

I ran into the same issue and was able to run RNIE with infernal version 1.0 installed

Answer 3 · 2023-03-13T19:23:01.000Z

Yep, Infernal 1.0 is what was used for optimising the terminator annotations. It would take some work to perform a similar optimisation with the latest Infernal release.