Current cmsearch missing required options
Opened this issue · 3 comments
chofski commented
Using the latest Infernal package leads to an error from RNIE due to the "--fil-no-qdb" option not being supported. Would suggest updating docs to highlight specific version of Infernal to use or update Perl script to handle these changes.
ppgardne commented
Thanks for the reminder Thomas.
I've been meaning to update the docs for a while. Unfortunately I haven't got around to reparameterising for the latest versions of Infernal.
NickNCL commented
I ran into the same issue and was able to run RNIE with infernal version 1.0 installed
ppgardne commented
Yep, Infernal 1.0 is what was used for optimising the terminator annotations. It would take some work to perform a similar optimisation with the latest Infernal release.