protegeproject/cellfie-plugin

Grocery tutorial throws error

Opened this issue · 1 comments

Deleted user commented

While following tutorial: https://github.com/protegeproject/cellfie-plugin/wiki/Grocery-Tutorial, user is asked to download Grocery ontology (https://raw.githubusercontent.com/protegeproject/github-wiki-resources/master/cellfie/Working-Samples/posc-groceries.owl) and Excel workbook (https://raw.githubusercontent.com/protegeproject/github-wiki-resources/master/cellfie/Working-Samples/grocery-item.xlsx).

Tutorial works fine till step 2. Step 3 fails with following error "The expected entity name "GroceryItem" doesn't exist in ontology". Step 3 mandates that ontology file already be loaded (copy/pasted: In the example above, the class GroceryItem must already be typed int the ontology.). Loading of Grocery ontology is not explained in step 1 or 2. At least, tutorial could have provided another link on loading Grocery Ontology prior to step 1 or at step 3.

Expected: A short note or link to load Ontology files.

johardi commented

Hi, thanks for using the tutorial. The instruction to load the ontology is already mentioned in Step 1, the first sentence:

Open the grocery ontology using Protégé by double-clicking the OWL file.

I think it doesn't cover the case where users already open Protégé and start doing the tutorial. I've added a sentence to load the ontology to cover this extra case. I've fixed also the typo in Step 3.