ImportError: libnetcdf.so.13
Closed this issue · 2 comments
niko97320 commented
Hi there,
I have tried to install ProtoCaller on a new machine and I am now confronted to the following. I have installed the package using the recommended conda command in a python 3.7 environnement.
ImportError Traceback (most recent call last)
<ipython-input-2-56575bd78640> in <module>
----> 1 import ProtoCaller
~/.conda/envs/protocaller/lib/python3.7/site-packages/ProtoCaller/__init__.py in <module>
119 with _warnings.catch_warnings():
120 _warnings.filterwarnings("ignore")
--> 121 from . import Ensemble
122 from . import IO
123 from . import Morph
~/.conda/envs/protocaller/lib/python3.7/site-packages/ProtoCaller/Ensemble/__init__.py in <module>
5 import ProtoCaller as _PC
6 from .Ligand import Ligand
----> 7 from .Perturbation import Perturbation
8 from .PerturbationList import PerturbationList
9 from .Protein import Protein
~/.conda/envs/protocaller/lib/python3.7/site-packages/ProtoCaller/Ensemble/Perturbation.py in <module>
3
4 # TODO support the native Morph class when it becomes viable
----> 5 import BioSimSpace as _BSS
6
7 from .Ligand import Ligand as _Ligand
~/.conda/envs/protocaller/lib/python3.7/site-packages/BioSimSpace/__init__.py in <module>
133
134 from . import Align
--> 135 from . import FreeEnergy
136 from . import Gateway
137 from . import IO
~/.conda/envs/protocaller/lib/python3.7/site-packages/BioSimSpace/FreeEnergy/__init__.py in <module>
33 """
34
---> 35 from ._binding import *
36 from ._solvation import *
~/.conda/envs/protocaller/lib/python3.7/site-packages/BioSimSpace/FreeEnergy/_binding.py in <module>
24 """
25
---> 26 from . import _free_energy
27 from .._SireWrappers import System as _System
28
~/.conda/envs/protocaller/lib/python3.7/site-packages/BioSimSpace/FreeEnergy/_free_energy.py in <module>
31 from Sire.Base import getBinDir as _getBinDir
32
---> 33 import Sire.IO as _SireIO
34 import Sire.Mol as _SireMol
35
~/.conda/envs/protocaller/lib/python3.7/site-packages/Sire/IO/__init__.py in <module>
11
12 # Import all of the classes and functions from the C++ library
---> 13 from Sire.IO._IO import *
14
15 # Now define some pure Python functions and classes that are part of
ImportError: libnetcdf.so.13: cannot open shared object file: No such file or directory
niko97320 commented
Seems to be fixed by the following
conda install -c conda-forge pyvista "vtk=8.1.2" "libnetcdf=4.6.2"
msuruzhon commented
Hi there,
Thanks for that. This seems to be BioSimSpace issue - I will notify the developers and post updates here.