All the modules marked as absent

[stefcamp]

I followed the procedure and all the scripts run correctly without errors; however in the output file all the modules are marked as absent (4). I checked manually the KEGG codes identified by "annotate.py" uploading directly in "https://www.genome.jp/kegg-bin/find_module_object" are results seems correct.
Do you have suggestiond regarding what is not working correctly?
Thanks in advance
Sincerely

Stefano Campanaro
Department of Biology
University of Padova

[Shirley-Q]

Hi Stefano
I have the same problem as you. Have you find a solution? If you find the answer, could you help me?
Thanks a lot
Alice

[stefcamp]

Dear Shirley,
Yes, I solved the problem.
There is a minor error at line 62 of the script "reconstruct_module.py", an "s" is missing in the web adress (the correct one is "https" and not "http")
https://www.genome.jp/kegg-bin/find_module_object
Sincerely

[Shirley-Q]

Dear Stefano
It works! Thanks a million. Your help really means a lot to me.
Thanks again.
Sincerely

[pseudonymcp]

Thanks, updated the url for KEGG Mapper (http -> https) in the code.