psl-schaefer

From biochemistry to computational biology

Institute for Computational BiomedicineHeidelberg, Germany

Pinned Repositories

lcsc
Language:R0 3 00
benchmark
Language:R0 1 00
bioinfo_playground
Language:TeX0 1 00
bomberman
Language:Python0 1 00
BPNet
Language:HTML0 1 00
CellBender
CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.
Language:Python0 0 00
conway_game_of_life
Language:Python0 1 00
misty_pathoplex
Language:Jupyter Notebook1 1 10
liana-py
LIANA+: an all-in-one framework for cell-cell communication
Language:Python167 3 10921
mistyR
Multiview Intercellular SpaTial modeling framework
Language:R49 3 1911

psl-schaefer's Repositories

psl-schaefer/misty_pathoplex
Language:Jupyter Notebook1 1 10
psl-schaefer/benchmark
Language:R0 1 00
psl-schaefer/bioinfo_playground
Language:TeX0 1 00
psl-schaefer/bomberman
Language:Python0 1 00
psl-schaefer/BPNet
Language:HTML0 1 00
psl-schaefer/CellBender
CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.
Language:Python0 0 00
psl-schaefer/conway_game_of_life
Language:Python0 1 00
psl-schaefer/dandelion
Language:Jupyter Notebook0 0
psl-schaefer/decoupler-py
Python package to perform enrichment analysis from omics data.
Language:Python0 0
psl-schaefer/kaggle_titanic
Language:Jupyter Notebook1 0
psl-schaefer/liana-py
LIANA: a LIgand-receptor ANalysis frAmework
Language:Python0 0
psl-schaefer/liana_spatial_cite-seq
Language:Jupyter Notebook
psl-schaefer/mibi_analysis
Language:R1 0
psl-schaefer/mistyR
Multiview Intercellular SpaTial modeling framework
Language:R0 0
psl-schaefer/mofapy2
Multi-omics factor analysis v2
Language:Python0 0
psl-schaefer/MolBio_Webpage
Language:CSS1 0
psl-schaefer/paper-qa
High accuracy RAG for answering questions from scientific documents with citations
psl-schaefer/PhilippSLSchaefer
Language:HTML0 0
psl-schaefer/psl-schaefer
1 0
psl-schaefer/report
Language:R1 0
psl-schaefer/rethinking-numpyro
Statistical Rethinking (2nd ed.) with NumPyro
Language:Jupyter Notebook0 0
psl-schaefer/ridge
CRAN R Package: Ridge Regression with automatic selection of the penalty parameter
Language:R0 0
psl-schaefer/rmd_templates
1 0
psl-schaefer/sco-lecture
Language:R0 0
psl-schaefer/spacexr
Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics
Language:HTML0 0
psl-schaefer/starfysh
Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology
Language:Jupyter Notebook
psl-schaefer/stLearn
A novel machine learning pipeline to analyse spatial transcriptomics data
Language:Python0 0
psl-schaefer/testing_misty_py
Language:Jupyter Notebook1 0
psl-schaefer/VisiumMS
Study of Multiple Sclerosis(MS) using paried snRNA-seq and Visium transcriptmics datasets.
Language:Jupyter Notebook0 0
psl-schaefer/VisiumMS_copy
Language:Jupyter Notebook1 0