Numpy 1.24 breaks compiling Slycot
bnavigator opened this issue · 3 comments
bnavigator commented
Numpy 1.24.0 came out a few hours ago and broke compiling the Fortran wrappers.
ben@skylab:~/src/Slycot]% pip wheel . [0]
Processing /home/ben/src/Slycot
Installing build dependencies ... done
Getting requirements to build wheel ... done
Preparing metadata (pyproject.toml) ... done
Collecting numpy
Using cached numpy-1.24.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (17.3 MB)
Saved ./numpy-1.24.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Building wheels for collected packages: slycot
Building wheel for slycot (pyproject.toml) ... error
error: subprocess-exited-with-error
× Building wheel for slycot (pyproject.toml) did not run successfully.
│ exit code: 1
╰─> [594 lines of output]
--------------------------------------------------------------------------------
-- Trying "Ninja" generator
--------------------------------
---------------------------
----------------------
-----------------
------------
-------
--
Not searching for unused variables given on the command line.
CMake Error: CMake was unable to find a build program corresponding to "Ninja". CMAKE_MAKE_PROGRAM is not set. You probably need to select a different build tool.
-- Configuring incomplete, errors occurred!
See also "/home/ben/src/Slycot/_cmake_test_compile/build/CMakeFiles/CMakeOutput.log".
--
-------
------------
-----------------
----------------------
---------------------------
--------------------------------
-- Trying "Ninja" generator - failure
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-- Trying "Unix Makefiles" generator
--------------------------------
---------------------------
----------------------
-----------------
------------
-------
--
Not searching for unused variables given on the command line.
-- The C compiler identification is GNU 12.2.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- The Fortran compiler identification is GNU 12.2.1
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Check for working Fortran compiler: /usr/bin/gfortran - skipped
-- Configuring done
-- Generating done
-- Build files have been written to: /home/ben/src/Slycot/_cmake_test_compile/build
--
-------
------------
-----------------
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-- Trying "Unix Makefiles" generator - success
--------------------------------------------------------------------------------
Configuring Project
Working directory:
/home/ben/src/Slycot/_skbuild/linux-x86_64-3.10/cmake-build
Command:
cmake /home/ben/src/Slycot -G 'Unix Makefiles' -DCMAKE_INSTALL_PREFIX:PATH=/home/ben/src/Slycot/_skbuild/linux-x86_64-3.10/cmake-install -DPYTHON_VERSION_STRING:STRING=3.10.9 -DSKBUILD:INTERNAL=TRUE -DCMAKE_MODULE_PATH:PATH=/tmp/pip-build-env-_7jfm_0f/overlay/lib/python3.10/site-packages/skbuild/resources/cmake -DPYTHON_EXECUTABLE:PATH=/usr/bin/python3.10 -DPYTHON_INCLUDE_DIR:PATH=/usr/include/python3.10 -DPYTHON_LIBRARY:PATH=/usr/lib64/libpython3.10.so -DPython_EXECUTABLE:PATH=/usr/bin/python3.10 -DPython_ROOT_DIR:PATH=/usr -DPython_INCLUDE_DIR:PATH=/usr/include/python3.10 -DPython_FIND_REGISTRY:STRING=NEVER -DPython_NumPy_INCLUDE_DIRS:PATH=/tmp/pip-build-env-_7jfm_0f/overlay/lib64/python3.10/site-packages/numpy/core/include -DPython3_EXECUTABLE:PATH=/usr/bin/python3.10 -DPython3_ROOT_DIR:PATH=/usr -DPython3_INCLUDE_DIR:PATH=/usr/include/python3.10 -DPython3_FIND_REGISTRY:STRING=NEVER -DPython3_NumPy_INCLUDE_DIRS:PATH=/tmp/pip-build-env-_7jfm_0f/overlay/lib64/python3.10/site-packages/numpy/core/include -DCMAKE_BUILD_TYPE:STRING=Release
-- The C compiler identification is GNU 12.2.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- The Fortran compiler identification is GNU 12.2.1
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Check for working Fortran compiler: /usr/bin/gfortran - skipped
-- Found Python: /usr/bin/python3.10 (found version "3.10.9") found components: Interpreter Development NumPy Development.Module Development.Embed
-- Found PythonInterp: /usr/bin/python3.10 (found version "3.10.9")
-- Found PythonLibs: /usr/lib64/libpython3.10.so (found version "3.10.9")
-- Found NumPy: /tmp/pip-build-env-_7jfm_0f/overlay/lib64/python3.10/site-packages/numpy/core/include (found version "1.24.0")
-- Found F2PY: /tmp/pip-build-env-_7jfm_0f/overlay/bin/f2py3 (found version "1.24.0")
-- Looking for Fortran sgemm
-- Looking for Fortran sgemm - not found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Looking for Fortran sgemm
-- Looking for Fortran sgemm - found
-- Found BLAS: /usr/lib64/libblas.so
-- Looking for Fortran cheev
-- Looking for Fortran cheev - not found
-- Looking for Fortran cheev
-- Looking for Fortran cheev - found
-- Found LAPACK: /usr/lib64/liblapack.so;/usr/lib64/libblas.so
-- Python headers included from: /usr/include/python3.10
-- NumPy headers included from: /tmp/pip-build-env-_7jfm_0f/overlay/lib64/python3.10/site-packages/numpy/core/include
-- F2PY headers included from: /tmp/pip-build-env-_7jfm_0f/overlay/lib64/python3.10/site-packages/numpy/f2py/src;/tmp/pip-build-env-_7jfm_0f/overlay/lib64/python3.10/site-packages/numpy/core/include
-- LAPACK: /usr/lib64/liblapack.so;/usr/lib64/libblas.so
-- BLAS: /usr/lib64/libblas.so
-- Performing Test Weak Link MODULE -> SHARED (gnu_ld_ignore) - Success
_modinit_prefix:PyInit_
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
Python3_EXECUTABLE
Python3_FIND_REGISTRY
Python3_INCLUDE_DIR
Python3_NumPy_INCLUDE_DIRS
Python3_ROOT_DIR
SKBUILD
-- Build files have been written to: /home/ben/src/Slycot/_skbuild/linux-x86_64-3.10/cmake-build
[ 0%] Building C object CMakeFiles/_f2py_runtime_library.dir/tmp/pip-build-env-_7jfm_0f/overlay/lib64/python3.10/site-packages/numpy/f2py/src/fortranobject.c.o
[ 0%] Linking C static library lib_f2py_runtime_library.a
[ 0%] Built target _f2py_runtime_library
[ 0%] Built target wrapper
[ 0%] Generating _wrappermodule.c, _wrapper-f2pywrappers.f
Reading fortran codes...
Reading file '/home/ben/src/Slycot/slycot/src/_wrapper.pyf' (format:free)
Reading file '/home/ben/src/Slycot/slycot/src/analysis.pyf' (format:free)
Reading file '/home/ben/src/Slycot/slycot/src/math.pyf' (format:free)
Reading file '/home/ben/src/Slycot/slycot/src/synthesis.pyf' (format:free)
Reading file '/home/ben/src/Slycot/slycot/src/transform.pyf' (format:free)
Reading file '/home/ben/src/Slycot/slycot/src/_helper.pyf' (format:free)
Post-processing...
Block: SLYCOT
Block: _wrapper
Block: ab01nd
Block: ab05md
Block: ab05nd
Block: ab07nd
Block: ab08nd
Block: ab08nz
Block: ab09ad
Block: ab09ax
Block: ab09bd
Block: ab09md
Block: ab09nd
Block: ab13bd
Block: ab13dd
Block: ab13md
Block: ab13ed
Block: ab13fd
Block: ag08bd
Block: mc01td
Block: mb03rd
Block: mb03vd
Block: mb03vy
Block: mb03wd
Block: mb05md
Block: mb05nd
Block: sb01bd
Block: sb02md
Block: sb02od_n
Block: sb02od_c
Block: sb02od_d
Block: sb02od_b
Block: sb02mt_n
Block: sb02mt_c
Block: sb02mt_nl
Block: sb02mt_cl
Block: sb03md
Block: sb03od
Block: sb04md
Block: sb04qd
Block: sb10ad
Block: sb10dd
Block: sb10fd
Block: sb10hd
Block: sb10jd
Block: sg03ad
Block: sg02ad_g
Block: sg02ad_bn
Block: sg02ad_bc
Block: sg02ad_bd
Block: sg02ad_bb
Block: sg03bd
Block: tb01id
Block: tb03ad_l
Block: tb03ad_r
Block: tb04ad_r
Block: tb04ad_c
Block: tb05ad_ag
Block: tb05ad_ng
Block: tb05ad_nh
Block: tc01od_l
Block: tc01od_r
Block: tc04ad_l
Block: tc04ad_r
Block: td04ad_r
Block: td04ad_c
Block: tf01md
Block: tf01rd
Block: tb01pd
Block: tg01ad
Block: tg01fd_nn
Block: tg01fd_ii
Block: tg01fd_uu
Block: ftruefalse
Block: xerbla
Applying post-processing hooks...
character_backward_compatibility_hook
Post-processing (stage 2)...
Building modules...
Building module "_wrapper"...
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "ab01nd"...
a,b,ncont,indcon,nblk,z,tau,info = ab01nd(jobz,n,m,a,b,[tol,ldwork])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "ab05md"...
n,a,b,c,d,info = ab05md(n1,m1,p1,n2,p2,a1,b1,c1,d1,a2,b2,c2,d2,[uplo,ldwork])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "ab05nd"...
n,a,b,c,d,info = ab05nd(n1,m1,p1,n2,alpha,a1,b1,c1,d1,a2,b2,c2,d2,[ldwork])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "ab07nd"...
a,b,c,d,rcond,info = ab07nd(n,m,a,b,c,d,[ldwork,overwrite_a,overwrite_b,overwrite_c,overwrite_d])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "ab08nd"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
getarrdims:warning: assumed shape array, using 0 instead of '*'
getarrdims:warning: assumed shape array, using 0 instead of '*'
getarrdims:warning: assumed shape array, using 0 instead of '*'
nu,rank_bn,dinfz,nkror,nkrol,infz,kronr,kronl,af,bf,info = ab08nd(n,m,p,a,b,c,d,[equil,tol,ldwork])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "ab08nz"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
getarrdims:warning: assumed shape array, using 0 instead of '*'
getarrdims:warning: assumed shape array, using 0 instead of '*'
getarrdims:warning: assumed shape array, using 0 instead of '*'
nu,rank_bn,dinfz,nkror,nkrol,infz,kronr,kronl,af,bf,zwork,info = ab08nz(n,m,p,a,b,c,d,[equil,tol,lzwork])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "ab09ad"...
nr,a,b,c,hsv,iwarn,info = ab09ad(dico,job,equil,ordsel,n,m,p,nr,a,b,c,[tol,ldwork,overwrite_a,overwrite_b,overwrite_c])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "ab09ax"...
nr,a,b,c,hsv,t,ti,iwarn,info = ab09ax(dico,job,ordsel,n,m,p,nr,a,b,c,[tol,ldwork,overwrite_a,overwrite_b,overwrite_c])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "ab09bd"...
nr,a,b,c,d,hsv,iwarn,info = ab09bd(dico,job,equil,ordsel,n,m,p,nr,a,b,c,d,[tol1,tol2,ldwork,overwrite_a,overwrite_b,overwrite_c,overwrite_d])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "ab09md"...
nr,a,b,c,ns,hsv,iwarn,info = ab09md(dico,job,equil,ordsel,n,m,p,nr,alpha,a,b,c,[tol,ldwork,overwrite_a,overwrite_b,overwrite_c])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "ab09nd"...
nr,a,b,c,d,ns,hsv,iwarn,info = ab09nd(dico,job,equil,ordsel,n,m,p,nr,alpha,a,b,c,d,[tol1,tol2,ldwork,overwrite_a,overwrite_b,overwrite_c,overwrite_d])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Creating wrapper for Fortran function "ab13bd"("ab13bd")...
Constructing wrapper function "ab13bd"...
ab13bd,nq,iwarn,info = ab13bd(dico,jobn,n,m,p,a,b,c,d,tol)
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "ab13dd"...
fpeak,gpeak,info = ab13dd(dico,jobe,equil,jobd,n,m,p,fpeak,a,e,b,c,d,[tol])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "ab13md"...
x,bound,d,g,info = ab13md(fact,z,nblock,itype,x)
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "ab13ed"...
low,high,info = ab13ed(n,a,[tol])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "ab13fd"...
beta,omega,info = ab13fd(n,a,[tol])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "ag08bd"...
a,e,nfz,nrank,niz,dinfz,nkror,ninfe,nkrol,infz,kronr,infe,kronl,info = ag08bd(equil,l,n,m,p,a,e,b,c,d,tol,ldwork,[overwrite_a,overwrite_e,overwrite_b,overwrite_c,overwrite_d])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "mc01td"...
dp,stable,nz,iwarn,info = mc01td(dico,dp,p)
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "mb03rd"...
a,x,nblcks,blsize,wr,wi,info = mb03rd(jobx,sort,n,pmax,a,x,tol,[overwrite_a,overwrite_x])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "mb03vd"...
a,tau,info = mb03vd(n,ilo,ihi,a,[overwrite_a])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "mb03vy"...
a,info = mb03vy(n,ilo,ihi,a,tau,[ldwork,overwrite_a])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "mb03wd"...
h,z,wr,wi,info = mb03wd(job,compz,n,ilo,ihi,iloz,ihiz,h,z,[ldwork,overwrite_h,overwrite_z])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "mb05md"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
a,v,y,valr,vali,info = mb05md(balanc,n,delta,a,[overwrite_a])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "mb05nd"...
getctype: "integer(kind=check n>=0)" is mapped to C "int" (to override define dict(integer = dict(check n>=0="<C typespec>")) in /home/ben/src/Slycot/_skbuild/linux-x86_64-3.10/cmake-build/slycot/.f2py_f2cmap file).
getctype: "integer(kind=check m>=0)" is mapped to C "int" (to override define dict(integer = dict(check m>=0="<C typespec>")) in /home/ben/src/Slycot/_skbuild/linux-x86_64-3.10/cmake-build/slycot/.f2py_f2cmap file).
getctype: "integer(kind=check n>=0)" is mapped to C "int" (to override define dict(integer = dict(check n>=0="<C typespec>")) in /home/ben/src/Slycot/_skbuild/linux-x86_64-3.10/cmake-build/slycot/.f2py_f2cmap file).
getctype: "integer(kind=check n>=0)" is mapped to C "int" (to override define dict(integer = dict(check n>=0="<C typespec>")) in /home/ben/src/Slycot/_skbuild/linux-x86_64-3.10/cmake-build/slycot/.f2py_f2cmap file).
getctype: "integer(kind=check m>=0)" is mapped to C "int" (to override define dict(integer = dict(check m>=0="<C typespec>")) in /home/ben/src/Slycot/_skbuild/linux-x86_64-3.10/cmake-build/slycot/.f2py_f2cmap file).
getctype: "integer(kind=check m>=0)" is mapped to C "int" (to override define dict(integer = dict(check m>=0="<C typespec>")) in /home/ben/src/Slycot/_skbuild/linux-x86_64-3.10/cmake-build/slycot/.f2py_f2cmap file).
getctype: "integer(kind=check n>=0)" is mapped to C "int" (to override define dict(integer = dict(check n>=0="<C typespec>")) in /home/ben/src/Slycot/_skbuild/linux-x86_64-3.10/cmake-build/slycot/.f2py_f2cmap file).
getctype: "integer(kind=check m>=0)" is mapped to C "int" (to override define dict(integer = dict(check m>=0="<C typespec>")) in /home/ben/src/Slycot/_skbuild/linux-x86_64-3.10/cmake-build/slycot/.f2py_f2cmap file).
getctype: "integer(kind=check p>=0)" is mapped to C "int" (to override define dict(integer = dict(check p>=0="<C typespec>")) in /home/ben/src/Slycot/_skbuild/linux-x86_64-3.10/cmake-build/slycot/.f2py_f2cmap file).
getctype: "integer(kind=check n>=0)" is mapped to C "int" (to override define dict(integer = dict(check n>=0="<C typespec>")) in /home/ben/src/Slycot/_skbuild/linux-x86_64-3.10/cmake-build/slycot/.f2py_f2cmap file).
getctype: "integer(kind=check n>=0)" is mapped to C "int" (to override define dict(integer = dict(check n>=0="<C typespec>")) in /home/ben/src/Slycot/_skbuild/linux-x86_64-3.10/cmake-build/slycot/.f2py_f2cmap file).
getctype: "integer(kind=check m>=0)" is mapped to C "int" (to override define dict(integer = dict(check m>=0="<C typespec>")) in /home/ben/src/Slycot/_skbuild/linux-x86_64-3.10/cmake-build/slycot/.f2py_f2cmap file).
getctype: "integer(kind=check m>=0)" is mapped to C "int" (to override define dict(integer = dict(check m>=0="<C typespec>")) in /home/ben/src/Slycot/_skbuild/linux-x86_64-3.10/cmake-build/slycot/.f2py_f2cmap file).
getctype: "integer(kind=check p>=0)" is mapped to C "int" (to override define dict(integer = dict(check p>=0="<C typespec>")) in /home/ben/src/Slycot/_skbuild/linux-x86_64-3.10/cmake-build/slycot/.f2py_f2cmap file).
getctype: "integer(kind=check p>=0)" is mapped to C "int" (to override define dict(integer = dict(check p>=0="<C typespec>")) in /home/ben/src/Slycot/_skbuild/linux-x86_64-3.10/cmake-build/slycot/.f2py_f2cmap file).
getctype: "integer(kind=check n>=0)" is mapped to C "int" (to override define dict(integer = dict(check n>=0="<C typespec>")) in /home/ben/src/Slycot/_skbuild/linux-x86_64-3.10/cmake-build/slycot/.f2py_f2cmap file).
getctype: "integer(kind=check m>=0)" is mapped to C "int" (to override define dict(integer = dict(check m>=0="<C typespec>")) in /home/ben/src/Slycot/_skbuild/linux-x86_64-3.10/cmake-build/slycot/.f2py_f2cmap file).
getctype: "integer(kind=check p>=0)" is mapped to C "int" (to override define dict(integer = dict(check p>=0="<C typespec>")) in /home/ben/src/Slycot/_skbuild/linux-x86_64-3.10/cmake-build/slycot/.f2py_f2cmap file).
getctype: "integer(kind=check n>=0)" is mapped to C "int" (to override define dict(integer = dict(check n>=0="<C typespec>")) in /home/ben/src/Slycot/_skbuild/linux-x86_64-3.10/cmake-build/slycot/.f2py_f2cmap file).
getctype: "integer(kind=check n>=0)" is mapped to C "int" (to override define dict(integer = dict(check n>=0="<C typespec>")) in /home/ben/src/Slycot/_skbuild/linux-x86_64-3.10/cmake-build/slycot/.f2py_f2cmap file).
getctype: "integer(kind=check m>=0)" is mapped to C "int" (to override define dict(integer = dict(check m>=0="<C typespec>")) in /home/ben/src/Slycot/_skbuild/linux-x86_64-3.10/cmake-build/slycot/.f2py_f2cmap file).
getctype: "integer(kind=check m>=0)" is mapped to C "int" (to override define dict(integer = dict(check m>=0="<C typespec>")) in /home/ben/src/Slycot/_skbuild/linux-x86_64-3.10/cmake-build/slycot/.f2py_f2cmap file).
getctype: "integer(kind=check p>=0)" is mapped to C "int" (to override define dict(integer = dict(check p>=0="<C typespec>")) in /home/ben/src/Slycot/_skbuild/linux-x86_64-3.10/cmake-build/slycot/.f2py_f2cmap file).
getctype: "integer(kind=check p>=0)" is mapped to C "int" (to override define dict(integer = dict(check p>=0="<C typespec>")) in /home/ben/src/Slycot/_skbuild/linux-x86_64-3.10/cmake-build/slycot/.f2py_f2cmap file).
getctype: "integer(kind=check n>=0)" is mapped to C "int" (to override define dict(integer = dict(check n>=0="<C typespec>")) in /home/ben/src/Slycot/_skbuild/linux-x86_64-3.10/cmake-build/slycot/.f2py_f2cmap file).
getctype: "integer(kind=check m>=0)" is mapped to C "int" (to override define dict(integer = dict(check m>=0="<C typespec>")) in /home/ben/src/Slycot/_skbuild/linux-x86_64-3.10/cmake-build/slycot/.f2py_f2cmap file).
getctype: "integer(kind=check p>=0)" is mapped to C "int" (to override define dict(integer = dict(check p>=0="<C typespec>")) in /home/ben/src/Slycot/_skbuild/linux-x86_64-3.10/cmake-build/slycot/.f2py_f2cmap file).
getctype: "integer(kind=check n>=0)" is mapped to C "int" (to override define dict(integer = dict(check n>=0="<C typespec>")) in /home/ben/src/Slycot/_skbuild/linux-x86_64-3.10/cmake-build/slycot/.f2py_f2cmap file).
getctype: "integer(kind=check n>=0)" is mapped to C "int" (to override define dict(integer = dict(check n>=0="<C typespec>")) in /home/ben/src/Slycot/_skbuild/linux-x86_64-3.10/cmake-build/slycot/.f2py_f2cmap file).
getctype: "integer(kind=check m>=0)" is mapped to C "int" (to override define dict(integer = dict(check m>=0="<C typespec>")) in /home/ben/src/Slycot/_skbuild/linux-x86_64-3.10/cmake-build/slycot/.f2py_f2cmap file).
getctype: "integer(kind=check m>=0)" is mapped to C "int" (to override define dict(integer = dict(check m>=0="<C typespec>")) in /home/ben/src/Slycot/_skbuild/linux-x86_64-3.10/cmake-build/slycot/.f2py_f2cmap file).
getctype: "integer(kind=check p>=0)" is mapped to C "int" (to override define dict(integer = dict(check p>=0="<C typespec>")) in /home/ben/src/Slycot/_skbuild/linux-x86_64-3.10/cmake-build/slycot/.f2py_f2cmap file).
getctype: "integer(kind=check p>=0)" is mapped to C "int" (to override define dict(integer = dict(check p>=0="<C typespec>")) in /home/ben/src/Slycot/_skbuild/linux-x86_64-3.10/cmake-build/slycot/.f2py_f2cmap file).
ex,exint,info = mb05nd(n,delta,a,tol,[overwrite_ex,overwrite_exint])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "sb01bd"...
a,wr,wi,nfp,nap,nup,f,z,iwarn,info = sb01bd(dico,n,m,np,alpha,a,b,wr,wi,[tol,ldwork,overwrite_a,overwrite_wr,overwrite_wi])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "sb02md"...
a,q,rcond,wr,wi,s,u,info = sb02md(dico,n,a,g,q,[hinv,uplo,scal,sort,ldwork,overwrite_a])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "sb02od_n"...
rcond,x,alfar,alfai,beta,s,t,info = sb02od_n(dico,n,m,a,b,q,r,l,[uplo,jobl,sort,tol,ldwork])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "sb02od_c"...
rcond,x,alfar,alfai,beta,s,t,info = sb02od_c(dico,n,m,p,a,b,q,r,l,[uplo,jobl,sort,tol,ldwork])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "sb02od_d"...
rcond,x,alfar,alfai,beta,s,t,info = sb02od_d(dico,n,m,p,a,b,q,r,l,[uplo,jobl,sort,tol,ldwork])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "sb02od_b"...
rcond,x,alfar,alfai,beta,s,t,info = sb02od_b(dico,n,m,p,a,b,q,r,l,[uplo,jobl,sort,tol,ldwork])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "sb02mt_n"...
a,b,q,r,l,ipiv,oufact,g,info = sb02mt_n(n,m,b,r,[uplo,ldwork,overwrite_b,overwrite_r])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "sb02mt_c"...
a,b,q,r,l,ipiv,oufact,g,info = sb02mt_c(n,m,b,r,[uplo,overwrite_b,overwrite_r])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "sb02mt_nl"...
a,b,q,r,l,ipiv,oufact,g,info = sb02mt_nl(n,m,a,b,q,r,l,[uplo,ldwork,overwrite_a,overwrite_b,overwrite_q,overwrite_r,overwrite_l])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "sb02mt_cl"...
a,b,q,r,l,ipiv,oufact,g,info = sb02mt_cl(n,m,a,b,q,r,l,[uplo,overwrite_a,overwrite_b,overwrite_q,overwrite_r,overwrite_l])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "sb03md"...
a,u,c,scale,sep,ferr,wr,wi,info = sb03md(dico,n,a,u,c,[job,fact,trana,ldwork,overwrite_a,overwrite_u,overwrite_c])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "sb03od"...
b,scale,wr,wi,info = sb03od(dico,n,m,a,q,b,[fact,trans,ldwork,overwrite_b])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "sb04md"...
a,b,c,z,info = sb04md(n,m,a,b,c,[ldwork,overwrite_a,overwrite_b,overwrite_c])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "sb04qd"...
a,b,c,z,info = sb04qd(n,m,a,b,c,[ldwork,overwrite_a,overwrite_b,overwrite_c])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "sb10ad"...
gamma,ak,bk,ck,dk,ac,bc,cc,dc,rcond,info = sb10ad(job,n,m,np,ncon,nmeas,gamma,a,b,c,d,[gtol,actol,liwork,ldwork])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "sb10dd"...
gamma,ak,bk,ck,dk,x,z,rcond,info = sb10dd(n,m,np,ncon,nmeas,gamma,a,b,c,d,[tol,ldwork])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "sb10fd"...
ak,bk,ck,dk,rcond,info = sb10fd(n,m,np,ncon,nmeas,gamma,a,b,c,d,tol,ldwork)
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "sb10hd"...
ak,bk,ck,dk,rcond,info = sb10hd(n,m,np,ncon,nmeas,a,b,c,d,[tol,ldwork])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "sb10jd"...
a,b,c,d,nsys,info = sb10jd(n,m,np,a,b,c,d,e,ldwork,[overwrite_a,overwrite_b,overwrite_c,overwrite_d,overwrite_e])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "sg03ad"...
a,e,q,z,x,scale,sep,ferr,alphar,alphai,beta,info = sg03ad(dico,job,fact,trans,uplo,n,a,e,q,z,x,[ldwork])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "sg02ad_g"...
rcondu,x,alfar,alfai,beta,s,t,u,iwarn,info = sg02ad_g(dico,uplo,sort,acc,n,a,e,b,q,[ldwork])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "sg02ad_bn"...
rcondu,x,alfar,alfai,beta,s,t,u,iwarn,info = sg02ad_bn(dico,uplo,jobl,scal,sort,acc,n,m,a,e,b,q,r,l,[tol,ldwork])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "sg02ad_bc"...
rcondu,x,alfar,alfai,beta,s,t,u,iwarn,info = sg02ad_bc(dico,jobl,scal,sort,acc,n,m,p,a,e,b,q,r,l,[tol,ldwork])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "sg02ad_bd"...
rcondu,x,alfar,alfai,beta,s,t,u,iwarn,info = sg02ad_bd(dico,jobl,scal,sort,acc,n,m,p,a,e,b,q,r,l,[tol,ldwork])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "sg02ad_bb"...
rcondu,x,alfar,alfai,beta,s,t,u,iwarn,info = sg02ad_bb(dico,jobl,scal,sort,acc,n,m,p,a,e,b,q,r,l,[tol,ldwork])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "sg03bd"...
b,scale,alphar,alphai,beta,info = sg03bd(dico,n,m,a,e,q,z,b,[fact,trans,ldwork,overwrite_b])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "tb01id"...
maxred,a,b,c,scale,info = tb01id(n,m,p,maxred,a,b,c,[job,overwrite_a,overwrite_b,overwrite_c])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "tb03ad_l"...
a,b,c,nr,index_bn,pcoeff,qcoeff,vcoeff,info = tb03ad_l(n,m,p,a,b,c,d,[equil,tol,ldwork])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "tb03ad_r"...
a,b,c,nr,index_bn,pcoeff,qcoeff,vcoeff,info = tb03ad_r(n,m,p,a,b,c,d,[equil,tol,ldwork])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "tb04ad_r"...
a,b,c,nr,index_bn,dcoeff,ucoeff,info = tb04ad_r(n,m,p,a,b,c,d,[tol1,tol2,ldwork,overwrite_a,overwrite_b,overwrite_c])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "tb04ad_c"...
a,b,c,nr,index_bn,dcoeff,ucoeff,info = tb04ad_c(n,m,p,a,b,c,d,[tol1,tol2,ldwork,overwrite_a,overwrite_b,overwrite_c])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "tb05ad_ag"...
a,b,c,rcond,g,evre,evim,hinvb,info = tb05ad_ag(n,m,p,freq,a,b,c,[ldwork,lzwork,overwrite_a,overwrite_b,overwrite_c])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "tb05ad_ng"...
a,b,c,g,hinvb,info = tb05ad_ng(n,m,p,freq,a,b,c,[ldwork,lzwork,overwrite_a,overwrite_b,overwrite_c])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "tb05ad_nh"...
g,hinvb,info = tb05ad_nh(n,m,p,freq,a,b,c,[ldwork,lzwork])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "tc01od_l"...
pcoeff,qcoeff,info = tc01od_l(m,p,indlim,pcoeff,qcoeff)
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "tc01od_r"...
info = tc01od_r(p,indlim,pcoeff,qcoeff,[m])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "tc04ad_l"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
getarrdims:warning: assumed shape array, using 0 instead of '*'
n,rcond,a,b,c,d,info = tc04ad_l(m,p,index_bn,pcoeff,qcoeff,n,[ldwork])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "tc04ad_r"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
getarrdims:warning: assumed shape array, using 0 instead of '*'
n,rcond,a,b,c,d,info = tc04ad_r(m,p,index_bn,pcoeff,qcoeff,n,[ldwork])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "td04ad_r"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
getarrdims:warning: assumed shape array, using 0 instead of '*'
nr,a,b,c,d,info = td04ad_r(m,p,index_bn,dcoeff,ucoeff,nr,[tol,ldwork,overwrite_dcoeff,overwrite_ucoeff])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "td04ad_c"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
getarrdims:warning: assumed shape array, using 0 instead of '*'
nr,a,b,c,d,info = td04ad_c(m,p,index_bn,dcoeff,ucoeff,nr,[tol,ldwork,overwrite_dcoeff,overwrite_ucoeff])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "tf01md"...
x,y,info = tf01md(n,m,p,ny,a,b,c,d,u,x,[overwrite_x])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "tf01rd"...
h,info = tf01rd(na,nb,nc,n,a,b,c,[ldwork])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "tb01pd"...
a,b,c,nr,info = tb01pd(n,m,p,a,b,c,[job,equil,tol,ldwork,overwrite_a,overwrite_b,overwrite_c])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "tg01ad"...
a,e,b,c,lscale,rscale,info = tg01ad(job,l,n,m,p,thresh,a,e,b,c,[overwrite_a,overwrite_e,overwrite_b,overwrite_c])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "tg01fd_nn"...
a,e,b,c,ranke,rnka22,info = tg01fd_nn(joba,l,n,m,p,a,e,b,c,tol,ldwork,[overwrite_a,overwrite_e,overwrite_b,overwrite_c])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "tg01fd_ii"...
a,e,b,c,q,z,ranke,rnka22,info = tg01fd_ii(joba,l,n,m,p,a,e,b,c,tol,ldwork,[overwrite_a,overwrite_e,overwrite_b,overwrite_c])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "tg01fd_uu"...
a,e,b,c,q,z,ranke,rnka22,info = tg01fd_uu(joba,l,n,m,p,a,e,b,c,q,z,tol,ldwork,[overwrite_a,overwrite_e,overwrite_b,overwrite_c,overwrite_q,overwrite_z])
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "ftruefalse"...
ftrue,ffalse = ftruefalse()
Generating possibly empty wrappers"
Maybe empty "_wrapper-f2pywrappers.f"
Constructing wrapper function "xerbla"...
xerbla(srname,info)
Wrote C/API module "_wrapper" to file "./_wrappermodule.c"
Fortran 77 wrappers are saved to "./_wrapper-f2pywrappers.f"
Building module "SLYCOT"...
Wrote C/API module "SLYCOT" to file "./SLYCOTmodule.c"
[ 0%] Building C object slycot/CMakeFiles/_wrapper.dir/_wrappermodule.c.o
/home/ben/src/Slycot/_skbuild/linux-x86_64-3.10/cmake-build/slycot/_wrappermodule.c: In Funktion »f2py_rout__wrapper_ab01nd«:
/home/ben/src/Slycot/_skbuild/linux-x86_64-3.10/cmake-build/slycot/_wrappermodule.c:772:12: Fehler: ungültiger Typ »int« für unäres »*«
772 | ldz = (*jobz=='N' ? 1 : n);
| ^~~~~
/home/ben/src/Slycot/_skbuild/linux-x86_64-3.10/cmake-build/slycot/_wrappermodule.c: In Funktion »f2py_rout__wrapper_mb03rd«:
/home/ben/src/Slycot/_skbuild/linux-x86_64-3.10/cmake-build/slycot/_wrappermodule.c:6864:18: Fehler: ungültiger Typ »int« für unäres »*«
6864 | CHECKSCALAR((*jobx == 'N' && ldx>=1) || (*jobx == 'U' && ldx >= max(1,n)),"(*jobx == 'N' && ldx>=1) || (*jobx == 'U' && ldx >= max(1,n))","hidden ldx","mb03rd:ldx=%d",ldx) {
| ^~~~~
/home/ben/src/Slycot/_skbuild/linux-x86_64-3.10/cmake-build/slycot/_wrappermodule.c:100:11: Anmerkung: in Definition des Makros »CHECKSCALAR«
100 | if (!(check)) {\
| ^~~~~
/home/ben/src/Slycot/_skbuild/linux-x86_64-3.10/cmake-build/slycot/_wrappermodule.c:6864:46: Fehler: ungültiger Typ »int« für unäres »*«
6864 | CHECKSCALAR((*jobx == 'N' && ldx>=1) || (*jobx == 'U' && ldx >= max(1,n)),"(*jobx == 'N' && ldx>=1) || (*jobx == 'U' && ldx >= max(1,n))","hidden ldx","mb03rd:ldx=%d",ldx) {
| ^~~~~
/home/ben/src/Slycot/_skbuild/linux-x86_64-3.10/cmake-build/slycot/_wrappermodule.c:100:11: Anmerkung: in Definition des Makros »CHECKSCALAR«
100 | if (!(check)) {\
| ^~~~~
gmake[2]: *** [slycot/CMakeFiles/_wrapper.dir/build.make:88: slycot/CMakeFiles/_wrapper.dir/_wrappermodule.c.o] Fehler 1
gmake[1]: *** [CMakeFiles/Makefile2:171: slycot/CMakeFiles/_wrapper.dir/all] Fehler 2
gmake: *** [Makefile:136: all] Fehler 2
Traceback (most recent call last):
File "/tmp/pip-build-env-_7jfm_0f/overlay/lib/python3.10/site-packages/skbuild/setuptools_wrap.py", line 640, in setup
cmkr.make(make_args, install_target=cmake_install_target, env=env)
File "/tmp/pip-build-env-_7jfm_0f/overlay/lib/python3.10/site-packages/skbuild/cmaker.py", line 684, in make
self.make_impl(clargs=clargs, config=config, source_dir=source_dir, install_target=install_target, env=env)
File "/tmp/pip-build-env-_7jfm_0f/overlay/lib/python3.10/site-packages/skbuild/cmaker.py", line 715, in make_impl
raise SKBuildError(
An error occurred while building with CMake.
Command:
cmake --build . --target install --config Release --
Install target:
install
Source directory:
/home/ben/src/Slycot
Working directory:
/home/ben/src/Slycot/_skbuild/linux-x86_64-3.10/cmake-build
Please check the install target is valid and see CMake's output for more information.
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
ERROR: Failed building wheel for slycot
Failed to build slycot
ERROR: Failed to build one or more wheels
[ben@skylab:~/src/Slycot]% pip list [1]
roryyorke commented
FWIW, with numpy 1.23.5, ab01nd builds, and its tests pass, with this diff, inspired by https://github.com/scipy/scipy/blob/main/scipy/linalg/flapack_gen.pyf.src#L534 which was noted as (eventually) working in the numpy PR for this.
diff --git a/slycot/src/analysis.pyf b/slycot/src/analysis.pyf
index 633ff6e..9945ca0 100644
--- a/slycot/src/analysis.pyf
+++ b/slycot/src/analysis.pyf
@@ -11,7 +11,7 @@ subroutine ab01nd(jobz,n,m,a,lda,b,ldb,ncont,indcon,nblk,z,ldz,tau,tol,iwork,dwo
integer intent(out) :: indcon
integer intent(out),dimension(n),depend(n) :: nblk
double precision intent(out),dimension(ldz,n),depend(n,ldz) :: z
- integer intent(hide),depend(n, jobz) :: ldz = (*jobz == 'N' ? 1 : n)
+ integer intent(hide),depend(n, jobz) :: ldz = (jobz == 'N' ? 1 : n)
double precision intent(out),dimension(n),depend(n) :: tau
double precision :: tol = 0
integer intent(hide,cache),dimension(m),depend(m) :: iworkThere is something wrong with my setup, though, since with or without the above, test_xerbla_override fails.
I presume numpy 1.24 must be installed from PyPI, I haven't tried that yet.
roryyorke commented
hm, I was too hasty; maybe the tests are incomplete?
/home/rory/src/slycot/_skbuild/linux-x86_64-3.11/cmake-build/slycot/_wrappermodule.c:738:16: warning: comparison between pointer and integer
738 | ldz = (jobz=='N' ? 1 : n);
roryyorke commented
with this diff, both tests in test_mb03rd fail.
iff --git a/slycot/src/analysis.pyf b/slycot/src/analysis.pyf
index 633ff6e..9945ca0 100644
--- a/slycot/src/analysis.pyf
+++ b/slycot/src/analysis.pyf
@@ -11,7 +11,7 @@ subroutine ab01nd(jobz,n,m,a,lda,b,ldb,ncont,indcon,nblk,z,ldz,tau,tol,iwork,dwo
integer intent(out) :: indcon
integer intent(out),dimension(n),depend(n) :: nblk
double precision intent(out),dimension(ldz,n),depend(n,ldz) :: z
- integer intent(hide),depend(n, jobz) :: ldz = (*jobz == 'N' ? 1 : n)
+ integer intent(hide),depend(n, jobz) :: ldz = (jobz == 'N' ? 1 : n)
double precision intent(out),dimension(n),depend(n) :: tau
double precision :: tol = 0
integer intent(hide,cache),dimension(m),depend(m) :: iwork
diff --git a/slycot/src/math.pyf b/slycot/src/math.pyf
index 7dc53ff..9ed94ed 100644
--- a/slycot/src/math.pyf
+++ b/slycot/src/math.pyf
@@ -20,7 +20,7 @@ subroutine mb03rd(jobx,sort,n,pmax,a,lda,x,ldx,nblcks,blsize,wr,wi,tol,dwork,inf
double precision intent(in,out,copy),dimension(lda,n),depend(n) :: a
integer intent(hide),check(lda>=max(1,n)),depend(a,n) :: lda=shape(a,0)
double precision intent(in,out,copy),dimension(ldx,n),depend(n) :: x
- integer intent(hide),check((*jobx == 'N' && ldx>=1) || (*jobx == 'U' && ldx >= max(1,n))),depend(x,n,jobx) :: ldx=shape(x,0)
+ integer intent(hide),check((jobx == 'N' && ldx>=1) || (jobx == 'U' && ldx >= max(1,n))),depend(x,n,jobx) :: ldx=shape(x,0)
integer intent(out) :: nblcks
integer intent(out),dimension(n) :: blsize
double precision intent(out),dimension(n) :: wr