Compilation issue

Question

Compilation issue

Opened this issue 8 months ago · 1 comments

Dear developers,
I was trying to compile qcmaquis in the system and now I am getting the following issue. Could you please help me to figure out the solution to the problem

Thank you

[kalpa@compute build]$ cmake -DLINALG=MKL -DCMAKE_INSTALL_PREFIX=/opt/SOFTWARES/autoCAS/QCmaquis/qc_install ..

-- Found BLAS: /opt/compilers/intel/mkl/2023.0.0/lib/intel64/libmkl_intel_lp64.so;/opt/compilers/intel/mkl/2023.0.0/lib/intel64/libmkl_intel_thread.so;/opt/compilers/intel/mkl/2023.0.0/lib/intel64/libmkl_core.so;/opt/compilers/intel/compiler/2023.0.0/linux/compiler/lib/intel64_lin/libiomp5.so;-lpthread;-lm;-ldl
-- A library with LAPACK API found.
-- BLAS/LAPACK vendor: MKL
-- Enabling 64-bit integer interface with Intel MKL
-- Found BLAS: /opt/compilers/intel/mkl/2023.0.0/lib/intel64/libmkl_intel_ilp64.so;/opt/compilers/intel/mkl/2023.0.0/lib/intel64/libmkl_sequential.so;/opt/compilers/intel/mkl/2023.0.0/lib/intel64/libmkl_core.so;-lpthread;-lm;-ldl
-- A library with LAPACK API found.
-- BLAS library: /opt/compilers/intel/mkl/2023.0.0/lib/intel64/libmkl_intel_ilp64.so;/opt/compilers/intel/mkl/2023.0.0/lib/intel64/libmkl_sequential.so;/opt/compilers/intel/mkl/2023.0.0/lib/intel64/libmkl_core.so;-lpthread;-lm;-ldl
-- LAPACK library: /opt/compilers/intel/mkl/2023.0.0/lib/intel64/libmkl_intel_ilp64.so;/opt/compilers/intel/mkl/2023.0.0/lib/intel64/libmkl_sequential.so;/opt/compilers/intel/mkl/2023.0.0/lib/intel64/libmkl_core.so;-lpthread;-lm;-ldl;-lpthread;-lm;-ldl
-- Enabled symmetries: TwoU1PG;SU2U1PG
GSL_DEFINITIONS=
GSL_INCLUDE_DIRS=/opt/library/gsl-2.7/2.7/include
GSL_CFLAGS=-I/opt/library/gsl-2.7/2.7/include
-- Using GSL from
-- FindGSL: Found both GSL headers and library
No linear algebra library provided, trying to guess... Make sure you compile with the correct integer interface.
-- A library with LAPACK API found.
-- Lapack include:
-- Lapack lib dirs:
-- Lapack libs: /opt/compilers/intel/mkl/2023.0.0/lib/intel64/libmkl_intel_ilp64.so;/opt/compilers/intel/mkl/2023.0.0/lib/intel64/libmkl_sequential.so;/opt/compilers/intel/mkl/2023.0.0/lib/intel64/libmkl_core.so;-lpthread;-lm;-ldl;-lpthread;-lm;-ldl
CMake Warning at /opt/compilers/cmake/cmake-3.18.0-Linux-x86_64/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message):
New Boost version may have incorrect or missing dependencies and imported
targets
Call Stack (most recent call first):
/opt/compilers/cmake/cmake-3.18.0-Linux-x86_64/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES)
/opt/compilers/cmake/cmake-3.18.0-Linux-x86_64/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES)
CMakeLists.txt:278 (find_package)

CMake Warning at /opt/compilers/cmake/cmake-3.18.0-Linux-x86_64/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message):
New Boost version may have incorrect or missing dependencies and imported
targets
Call Stack (most recent call first):
/opt/compilers/cmake/cmake-3.18.0-Linux-x86_64/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES)
/opt/compilers/cmake/cmake-3.18.0-Linux-x86_64/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES)
CMakeLists.txt:278 (find_package)

-- Found Boost: /opt/library/boost/boost_1_84_0 (found suitable version "1.84.0", minimum required is "1.56") found components: program_options filesystem system serialization thread chrono date_time atomic
-- Looking for rpc/rpc.h
-- Looking for rpc/rpc.h - found
-- Looking for stdarg.h
-- Looking for stdarg.h - found
-- Looking for sys/stat.h
-- Looking for sys/stat.h - found
-- Looking for sys/systeminfo.h
-- Looking for sys/systeminfo.h - not found
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for unistd.h
-- Looking for unistd.h - found
-- Looking for windows.h
-- Looking for windows.h - not found
-- Looking for C++ include valarray
-- Looking for C++ include valarray - found
-- Found Git: /usr/bin/git (found version "1.8.3.1")
-- DMRG version: 3.1.3-e9770edae333be56b7bc0365aa96bc5844fc81d4 (master) release-3.1.3
-- Found OpenMP_C: -fopenmp (found version "3.1")
-- Found OpenMP_CXX: -fopenmp (found version "3.1")
-- Found OpenMP: TRUE (found version "3.1")
-- Configuring done
-- Generating done
-- Build files have been written to: /opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/build

[kalpa@compute build]$ make

Scanning dependencies of target alps
[ 1%] Building CXX object alps/src/alps/CMakeFiles/alps.dir/utility/encode.cpp.o
[ 3%] Building CXX object alps/src/alps/CMakeFiles/alps.dir/utility/copyright.cpp.o
[ 5%] Building CXX object alps/src/alps/CMakeFiles/alps.dir/utility/os.cpp.o
[ 6%] Building CXX object alps/src/alps/CMakeFiles/alps.dir/utility/temporary_filename.cpp.o
[ 8%] Building CXX object alps/src/alps/CMakeFiles/alps.dir/utility/vmusage.cpp.o
[ 10%] Building CXX object alps/src/alps/CMakeFiles/alps.dir/expression/evaluator.C.o
In file included from /opt/library/boost/boost_1_84_0/boost/math/special_functions/detail/round_fwd.hpp:11:0,
from /opt/library/boost/boost_1_84_0/boost/math/special_functions/math_fwd.hpp:29,
from /opt/library/boost/boost_1_84_0/boost/math/special_functions/airy.hpp:11,
from /opt/library/boost/boost_1_84_0/boost/math/special_functions.hpp:15,
from /opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/numeric/special_functions.hpp:37,
from /opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/multi_array/functions.hpp:33,
from /opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/multi_array.hpp:33,
from /opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/hdf5/multi_array.hpp:33,
from /opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/hdf5.hpp:38,
from /opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/parameter/parameters.h:52,
from /opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/parameter.h:35,
from /opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/expression/expression_fwd.h:37,
from /opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/expression/evaluator.h:34,
from /opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/expression/evaluator.C:30:
/opt/library/boost/boost_1_84_0/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp]

warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)"

In file included from /opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/ngs/cast.hpp:34:0,
from /opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/hdf5/map.hpp:32,
from /opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/hdf5.hpp:32,
from /opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/parameter/parameters.h:52,
from /opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/parameter.h:35,
from /opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/expression/expression_fwd.h:37,
from /opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/expression/evaluator.h:34,
from /opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/expression/evaluator.C:30:
/opt/library/boost/boost_1_84_0/boost/bind.hpp:41:265: note: #pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.
)
^
[ 11%] Building CXX object alps/src/alps/CMakeFiles/alps.dir/osiris/buffer.C.o
[ 13%] Building CXX object alps/src/alps/CMakeFiles/alps.dir/osiris/dump.C.o
[ 15%] Building CXX object alps/src/alps/CMakeFiles/alps.dir/osiris/dumparchive.C.o
[ 16%] Building CXX object alps/src/alps/CMakeFiles/alps.dir/osiris/process.C.o
[ 18%] Building CXX object alps/src/alps/CMakeFiles/alps.dir/osiris/comm.C.o
[ 20%] Building CXX object alps/src/alps/CMakeFiles/alps.dir/osiris/mpdump.C.o
[ 21%] Building CXX object alps/src/alps/CMakeFiles/alps.dir/osiris/xdrdump.C.o
[ 23%] Building CXX object alps/src/alps/CMakeFiles/alps.dir/osiris/xdrcore.C.o
[ 25%] Building CXX object alps/src/alps/CMakeFiles/alps.dir/parameter/parameter.C.o
[ 26%] Building CXX object alps/src/alps/CMakeFiles/alps.dir/parameter/parameterlist.C.o
In file included from /opt/library/boost/boost_1_84_0/boost/math/special_functions/detail/round_fwd.hpp:11:0,
from /opt/library/boost/boost_1_84_0/boost/math/special_functions/math_fwd.hpp:29,
from /opt/library/boost/boost_1_84_0/boost/math/special_functions/airy.hpp:11,
from /opt/library/boost/boost_1_84_0/boost/math/special_functions.hpp:15,
from /opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/numeric/special_functions.hpp:37,
from /opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/multi_array/functions.hpp:33,
from /opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/multi_array.hpp:33,
from /opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/hdf5/multi_array.hpp:33,
from /opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/hdf5.hpp:38,
from /opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/parameter/parameters.h:52,
from /opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/parameter/parameterlist.h:65,
from /opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/parameter/parameterlist.C:31:
/opt/library/boost/boost_1_84_0/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp]

warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)"

In file included from /opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/ngs/cast.hpp:34:0,
from /opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/hdf5/map.hpp:32,
from /opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/hdf5.hpp:32,
from /opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/parameter/parameters.h:52,
from /opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/parameter/parameterlist.h:65,
from /opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/parameter/parameterlist.C:31:
/opt/library/boost/boost_1_84_0/boost/bind.hpp:41:265: note: #pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.
)
^
[ 28%] Building CXX object alps/src/alps/CMakeFiles/alps.dir/parameter/parameters.C.o
In file included from /opt/library/boost/boost_1_84_0/boost/math/special_functions/detail/round_fwd.hpp:11:0,
from /opt/library/boost/boost_1_84_0/boost/math/special_functions/math_fwd.hpp:29,
from /opt/library/boost/boost_1_84_0/boost/math/special_functions/airy.hpp:11,
from /opt/library/boost/boost_1_84_0/boost/math/special_functions.hpp:15,
from /opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/numeric/special_functions.hpp:37,
from /opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/multi_array/functions.hpp:33,
from /opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/multi_array.hpp:33,
from /opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/hdf5/multi_array.hpp:33,
from /opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/hdf5.hpp:38,
from /opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/parameter/parameters.h:52,
from /opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/parameter/parameters.C:31:
/opt/library/boost/boost_1_84_0/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp]

warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)"

In file included from /opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/ngs/cast.hpp:34:0,
from /opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/hdf5/map.hpp:32,
from /opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/hdf5.hpp:32,
from /opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/parameter/parameters.h:52,
from /opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/parameter/parameters.C:31:
/opt/library/boost/boost_1_84_0/boost/bind.hpp:41:265: note: #pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.
)
^
[ 30%] Building CXX object alps/src/alps/CMakeFiles/alps.dir/parser/parser.C.o
[ 31%] Building CXX object alps/src/alps/CMakeFiles/alps.dir/parser/xmlattributes.C.o
[ 33%] Building CXX object alps/src/alps/CMakeFiles/alps.dir/parser/xmlhandler.C.o
[ 35%] Building CXX object alps/src/alps/CMakeFiles/alps.dir/parser/xmlparser.C.o
[ 36%] Building CXX object alps/src/alps/CMakeFiles/alps.dir/parser/xmlstream.C.o
/opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/parser/xmlstream.C: In function ‘std::string alps::convert(const string&)’:
/opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/parser/xmlstream.C:240:59: error: no matching function for call to ‘regex_replace(std::ostream_iterator&, std::basic_string::const_iterator, std::basic_string::const_iterator, std::regex, const char [46], const match_flag_type&)’
std::regex_constants::match_default);
^
/opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/parser/xmlstream.C:240:59: note: candidates are:
In file included from /usr/include/c++/4.8.2/regex:62:0,
from /opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/parser/xmlstream.C:36:
/usr/include/c++/4.8.2/bits/regex.h:2162:5: note: template<class _Out_iter, class _Bi_iter, class _Rx_traits, class _Ch_type> _Out_iter std::regex_replace(_Out_iter, _Bi_iter, _Bi_iter, const std::basic_regex<_Ch_type, _Rx_traits>&, const std::basic_string<_Ch_type>&, std::regex_constants::match_flag_type)
regex_replace(_Out_iter __out, _Bi_iter __first, _Bi_iter __last,
^
/usr/include/c++/4.8.2/bits/regex.h:2162:5: note: template argument deduction/substitution failed:
/opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/parser/xmlstream.C:240:59: note: mismatched types ‘const std::basic_string<_Ch_type>’ and ‘const char [46]’
std::regex_constants::match_default);
^
In file included from /usr/include/c++/4.8.2/regex:62:0,
from /opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/parser/xmlstream.C:36:
/usr/include/c++/4.8.2/bits/regex.h:2182:5: note: template<class _Rx_traits, class _Ch_type> std::basic_string<_Ch_type> std::regex_replace(const std::basic_string<_Ch_type>&, const std::basic_regex<_Ch_type, _Rx_traits>&, const std::basic_string<_Ch_type>&, std::regex_constants::match_flag_type)
regex_replace(const basic_string<_Ch_type>& __s,
^
/usr/include/c++/4.8.2/bits/regex.h:2182:5: note: template argument deduction/substitution failed:
/opt/SOFTWARES/autoCAS/QCmaquis/qcmaquis/dmrg/alps/src/alps/parser/xmlstream.C:240:59: note: ‘std::ostream_iterator’ is not derived from ‘const std::basic_string<_Ch_type>’
std::regex_constants::match_default);
^
alps/src/alps/CMakeFiles/alps.dir/build.make:354: recipe for target 'alps/src/alps/CMakeFiles/alps.dir/parser/xmlstream.C.o' failed
make[2]: *** [alps/src/alps/CMakeFiles/alps.dir/parser/xmlstream.C.o] Error 1
CMakeFiles/Makefile2:257: recipe for target 'alps/src/alps/CMakeFiles/alps.dir/all' failed
make[1]: *** [alps/src/alps/CMakeFiles/alps.dir/all] Error 2
Makefile:148: recipe for target 'all' failed
make: *** [all] Error 2
[kalpa@compute build]$ ls

Answer 1 · 2024-01-11T10:31:41.000Z

I'm not entirely sure, but seeing the file /usr/include/c++/4.8.2/bits/regex.h included suggests a very old, incompatible compiler. May I ask which compiler and operating system you're using?