qgrid post link fails on environment build
andrewfullard opened this issue · 2 comments
andrewfullard commented
Environment
- Operating System: Linux (CentOS)
- Python Version: 3.8.13
- How did you install Qgrid: conda environment file
- Python packages: https://github.com/tardis-sn/tardis/blob/master/tardis_env3.yml
Description of Issue
qgrid causes the environment solve to fail with a post-link script crash:
location of failed script: /home/afullard/.conda/envs/tardis2/bin/.qgrid-post-link.sh
==> script messages <==
<None>
==> script output <==
stdout:
stderr:
return code: 1```
### Reproduction Steps
1. `conda env create -f tardis_env3.yml`
### What steps have you taken to resolve this already?
Removing qgrid from the environment file solves the issue, but is obviously unsatisfactory.
andrewfullard commented
The solved environment, minus qgrid
#
# Name Version Build Channel
_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 2_gnu conda-forge
alabaster 0.7.12 py_0 conda-forge
argon2-cffi 21.3.0 pyhd8ed1ab_0 conda-forge
argon2-cffi-bindings 21.2.0 py38h0a891b7_2 conda-forge
astropy 5.0.4 py38h71d37f0_0 conda-forge
astropy-sphinx-theme 1.1 py_0 conda-forge
asttokens 2.0.8 pyhd8ed1ab_0 conda-forge
atk-1.0 2.36.0 h3371d22_4 conda-forge
attrs 22.1.0 pyh71513ae_1 conda-forge
babel 2.10.3 pyhd8ed1ab_0 conda-forge
backcall 0.2.0 pyh9f0ad1d_0 conda-forge
backports 1.0 py_2 conda-forge
backports.functools_lru_cache 1.6.4 pyhd8ed1ab_0 conda-forge
beautifulsoup4 4.11.1 pyha770c72_0 conda-forge
black 22.3.0 pyhd8ed1ab_0 conda-forge
bleach 5.0.1 pyhd8ed1ab_0 conda-forge
blosc 1.21.1 h83bc5f7_3 conda-forge
brotli 1.0.9 h166bdaf_7 conda-forge
brotli-bin 1.0.9 h166bdaf_7 conda-forge
brotlipy 0.7.0 py38h0a891b7_1004 conda-forge
bzip2 1.0.8 h7f98852_4 conda-forge
c-ares 1.18.1 h7f98852_0 conda-forge
ca-certificates 2022.9.24 ha878542_0 conda-forge
cached-property 1.5.2 hd8ed1ab_1 conda-forge
cached_property 1.5.2 pyha770c72_1 conda-forge
cairo 1.16.0 ha61ee94_1014 conda-forge
certifi 2022.9.24 pyhd8ed1ab_0 conda-forge
cffi 1.15.1 py38h4a40e3a_0 conda-forge
charset-normalizer 2.1.1 pyhd8ed1ab_0 conda-forge
click 8.1.3 py38h578d9bd_0 conda-forge
colorama 0.4.5 pyhd8ed1ab_0 conda-forge
commonmark 0.9.1 py_0 conda-forge
coverage 6.4.4 py38h0a891b7_0 conda-forge
cryptography 37.0.4 py38h2b5fc30_0 conda-forge
cycler 0.11.0 pyhd8ed1ab_0 conda-forge
dataclasses 0.8 pyhc8e2a94_3 conda-forge
debugpy 1.6.3 py38hfa26641_0 conda-forge
decorator 5.1.1 pyhd8ed1ab_0 conda-forge
defusedxml 0.7.1 pyhd8ed1ab_0 conda-forge
docutils 0.17.1 py38h578d9bd_2 conda-forge
dot2tex 2.11.3 pyhd8ed1ab_0 conda-forge
entrypoints 0.4 pyhd8ed1ab_0 conda-forge
executing 1.1.0 pyhd8ed1ab_0 conda-forge
expat 2.4.9 h27087fc_0 conda-forge
flit-core 3.7.1 pyhd8ed1ab_0 conda-forge
font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge
font-ttf-inconsolata 3.000 h77eed37_0 conda-forge
font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge
font-ttf-ubuntu 0.83 hab24e00_0 conda-forge
fontconfig 2.14.0 hc2a2eb6_1 conda-forge
fonts-conda-ecosystem 1 0 conda-forge
fonts-conda-forge 1 0 conda-forge
fonttools 4.37.3 py38h0a891b7_0 conda-forge
freetype 2.12.1 hca18f0e_0 conda-forge
fribidi 1.0.10 h36c2ea0_0 conda-forge
future 0.18.2 py38h578d9bd_5 conda-forge
gdk-pixbuf 2.42.8 hff1cb4f_1 conda-forge
gettext 0.19.8.1 h27087fc_1009 conda-forge
giflib 5.2.1 h36c2ea0_2 conda-forge
git-lfs 3.2.0 ha770c72_0 conda-forge
gmp 6.2.1 h58526e2_0 conda-forge
gmpy2 2.1.2 py38h8384b0a_0 conda-forge
graphite2 1.3.13 h58526e2_1001 conda-forge
graphviz 6.0.1 h5abf519_0 conda-forge
gtk2 2.24.33 h90689f9_2 conda-forge
gts 0.7.6 h64030ff_2 conda-forge
h5py 3.3.0 nompi_py38h9915d05_100 conda-forge
harfbuzz 5.2.0 hf9f4e7c_0 conda-forge
hdf5 1.10.6 nompi_h6a2412b_1114 conda-forge
icu 70.1 h27087fc_0 conda-forge
idna 3.4 pyhd8ed1ab_0 conda-forge
imagesize 1.4.1 pyhd8ed1ab_0 conda-forge
importlib-metadata 4.11.4 py38h578d9bd_0 conda-forge
importlib_metadata 4.11.4 hd8ed1ab_0 conda-forge
importlib_resources 5.9.0 pyhd8ed1ab_0 conda-forge
iniconfig 1.1.1 pyh9f0ad1d_0 conda-forge
ipykernel 6.15.3 pyh210e3f2_0 conda-forge
ipython 8.5.0 pyh41d4057_1 conda-forge
ipython_genutils 0.2.0 py_1 conda-forge
ipywidgets 8.0.2 pyhd8ed1ab_1 conda-forge
jedi 0.18.1 pyhd8ed1ab_2 conda-forge
jinja2 3.1.2 pyhd8ed1ab_1 conda-forge
jpeg 9e h166bdaf_2 conda-forge
jsonpointer 2.0 py_0 conda-forge
jsonschema 4.16.0 pyhd8ed1ab_0 conda-forge
jupyter_client 7.3.5 pyhd8ed1ab_0 conda-forge
jupyter_core 4.11.1 py38h578d9bd_0 conda-forge
jupyterlab_pygments 0.2.2 pyhd8ed1ab_0 conda-forge
jupyterlab_widgets 3.0.3 pyhd8ed1ab_0 conda-forge
keyutils 1.6.1 h166bdaf_0 conda-forge
kiwisolver 1.4.4 py38h43d8883_0 conda-forge
krb5 1.19.3 h3790be6_0 conda-forge
latexcodec 2.0.1 pyh9f0ad1d_0 conda-forge
lcms2 2.12 hddcbb42_0 conda-forge
ld_impl_linux-64 2.36.1 hea4e1c9_2 conda-forge
lerc 4.0.0 h27087fc_0 conda-forge
libblas 3.9.0 16_linux64_openblas conda-forge
libbrotlicommon 1.0.9 h166bdaf_7 conda-forge
libbrotlidec 1.0.9 h166bdaf_7 conda-forge
libbrotlienc 1.0.9 h166bdaf_7 conda-forge
libcblas 3.9.0 16_linux64_openblas conda-forge
libcurl 7.83.1 h7bff187_0 conda-forge
libdeflate 1.14 h166bdaf_0 conda-forge
libedit 3.1.20191231 he28a2e2_2 conda-forge
libev 4.33 h516909a_1 conda-forge
libffi 3.4.2 h7f98852_5 conda-forge
libgcc-ng 12.1.0 h8d9b700_16 conda-forge
libgd 2.3.3 h18fbbfe_3 conda-forge
libgfortran-ng 12.1.0 h69a702a_16 conda-forge
libgfortran5 12.1.0 hdcd56e2_16 conda-forge
libglib 2.74.0 h7a41b64_0 conda-forge
libgomp 12.1.0 h8d9b700_16 conda-forge
libiconv 1.17 h166bdaf_0 conda-forge
liblapack 3.9.0 16_linux64_openblas conda-forge
libllvm10 10.0.1 he513fc3_3 conda-forge
libnghttp2 1.47.0 hdcd2b5c_1 conda-forge
libnsl 2.0.0 h7f98852_0 conda-forge
libopenblas 0.3.21 pthreads_h78a6416_3 conda-forge
libpng 1.6.38 h753d276_0 conda-forge
librsvg 2.54.4 h7abd40a_0 conda-forge
libsodium 1.0.18 h36c2ea0_1 conda-forge
libsqlite 3.39.3 h753d276_0 conda-forge
libssh2 1.10.0 haa6b8db_3 conda-forge
libstdcxx-ng 12.1.0 ha89aaad_16 conda-forge
libtiff 4.4.0 h55922b4_4 conda-forge
libtool 2.4.6 h9c3ff4c_1008 conda-forge
libuuid 2.32.1 h7f98852_1000 conda-forge
libwebp 1.2.4 h522a892_0 conda-forge
libwebp-base 1.2.4 h166bdaf_0 conda-forge
libxcb 1.13 h7f98852_1004 conda-forge
libxml2 2.10.2 h4c7fe37_1 conda-forge
libxslt 1.1.35 h8affb1d_0 conda-forge
libzlib 1.2.12 h166bdaf_3 conda-forge
llvmlite 0.36.0 py38h4630a5e_0 conda-forge
lxml 4.9.1 py38h0a891b7_0 conda-forge
lz4-c 1.9.3 h9c3ff4c_1 conda-forge
lzo 2.10 h516909a_1000 conda-forge
markupsafe 2.1.1 py38h0a891b7_1 conda-forge
matplotlib-base 3.5.3 py38h38b5ce0_2 conda-forge
matplotlib-inline 0.1.6 pyhd8ed1ab_0 conda-forge
mistune 2.0.4 pyhd8ed1ab_0 conda-forge
mock 4.0.3 py38h578d9bd_3 conda-forge
mpc 1.2.1 h9f54685_0 conda-forge
mpfr 4.1.0 h9202a9a_1 conda-forge
mpmath 1.2.1 pyhd8ed1ab_0 conda-forge
munkres 1.1.4 pyh9f0ad1d_0 conda-forge
mypy_extensions 0.4.3 py38h578d9bd_5 conda-forge
nbclient 0.6.8 pyhd8ed1ab_0 conda-forge
nbconvert 7.0.0 pyhd8ed1ab_0 conda-forge
nbconvert-core 7.0.0 pyhd8ed1ab_0 conda-forge
nbconvert-pandoc 7.0.0 pyhd8ed1ab_0 conda-forge
nbformat 5.6.1 pyhd8ed1ab_0 conda-forge
nbsphinx 0.8.9 pyhd8ed1ab_0 conda-forge
ncurses 6.3 h27087fc_1 conda-forge
nest-asyncio 1.5.5 pyhd8ed1ab_0 conda-forge
networkx 2.8.6 pyhd8ed1ab_0 conda-forge
nomkl 1.0 h5ca1d4c_0 conda-forge
notebook 6.4.12 pyha770c72_0 conda-forge
numba 0.53.1 py38h8b71fd7_1 conda-forge
numexpr 2.8.3 py38h97b1c41_100 conda-forge
numpy 1.19.5 py38h8246c76_3 conda-forge
numpydoc 1.4.0 pyhd8ed1ab_1 conda-forge
openjpeg 2.5.0 h7d73246_1 conda-forge
openssl 1.1.1q h166bdaf_0 conda-forge
packaging 21.3 pyhd8ed1ab_0 conda-forge
pandas 1.0.5 py38hcb8c335_0 conda-forge
pandoc 2.19.2 ha770c72_0 conda-forge
pandocfilters 1.5.0 pyhd8ed1ab_0 conda-forge
pango 1.50.10 hc4f8a73_0 conda-forge
parso 0.8.3 pyhd8ed1ab_0 conda-forge
pathspec 0.10.1 pyhd8ed1ab_0 conda-forge
pbr 5.10.0 pyhd8ed1ab_0 conda-forge
pcre2 10.37 hc3806b6_1 conda-forge
pexpect 4.8.0 pyh9f0ad1d_2 conda-forge
pickleshare 0.7.5 py_1003 conda-forge
pillow 9.2.0 py38ha3b2c9c_2 conda-forge
pip 22.2.2 pyhd8ed1ab_0 conda-forge
pixman 0.40.0 h36c2ea0_0 conda-forge
pkgutil-resolve-name 1.3.10 pyhd8ed1ab_0 conda-forge
platformdirs 2.5.2 pyhd8ed1ab_1 conda-forge
plotly 5.10.0 pyhd8ed1ab_0 conda-forge
pluggy 1.0.0 py38h578d9bd_3 conda-forge
prometheus_client 0.14.1 pyhd8ed1ab_0 conda-forge
prompt-toolkit 3.0.31 pyha770c72_0 conda-forge
psutil 5.9.2 py38h0a891b7_0 conda-forge
pthread-stubs 0.4 h36c2ea0_1001 conda-forge
ptyprocess 0.7.0 pyhd3deb0d_0 conda-forge
pure_eval 0.2.2 pyhd8ed1ab_0 conda-forge
py 1.11.0 pyh6c4a22f_0 conda-forge
pybtex 0.24.0 pyhd8ed1ab_2 conda-forge
pybtex-docutils 1.0.2 py38h578d9bd_1 conda-forge
pycparser 2.21 pyhd8ed1ab_0 conda-forge
pyerfa 2.0.0.1 py38h71d37f0_2 conda-forge
pygments 2.13.0 pyhd8ed1ab_0 conda-forge
pygraphviz 1.10 py38h64b15e5_1 conda-forge
pyopenssl 22.0.0 pyhd8ed1ab_1 conda-forge
pyparsing 3.0.9 pyhd8ed1ab_0 conda-forge
pyrsistent 0.18.1 py38h0a891b7_1 conda-forge
pysocks 1.7.1 pyha2e5f31_6 conda-forge
pytables 3.6.1 py38hc386592_3 conda-forge
pytest 7.1.3 py38h578d9bd_0 conda-forge
pytest-cov 3.0.0 pyhd8ed1ab_0 conda-forge
pytest-doctestplus 0.12.0 pyhd8ed1ab_0 conda-forge
pytest-html 3.1.1 pyhd8ed1ab_0 conda-forge
pytest-metadata 2.0.2 pyhd8ed1ab_0 conda-forge
python 3.8.13 h582c2e5_0_cpython conda-forge
python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge
python-dokuwiki 1.3.3 pyhd8ed1ab_0 conda-forge
python-fastjsonschema 2.16.2 pyhd8ed1ab_0 conda-forge
python_abi 3.8 2_cp38 conda-forge
pytz 2022.2.1 pyhd8ed1ab_0 conda-forge
pyyaml 6.0 py38h0a891b7_4 conda-forge
pyzmq 24.0.1 py38hfc09fa9_0 conda-forge
radioactivedecay 0.4.15 pyhd8ed1ab_0 conda-forge
readline 8.1.2 h0f457ee_0 conda-forge
recommonmark 0.7.1 pyhd8ed1ab_0 conda-forge
requests 2.28.1 pyhd8ed1ab_1 conda-forge
scipy 1.5.3 py38hb2138dd_0 conda-forge
send2trash 1.8.0 pyhd8ed1ab_0 conda-forge
setuptools 59.8.0 py38h578d9bd_1 conda-forge
setuptools-scm 7.0.5 pyhd8ed1ab_0 conda-forge
setuptools_scm 7.0.5 hd8ed1ab_0 conda-forge
six 1.16.0 pyh6c4a22f_0 conda-forge
snakeviz 2.1.1 pyhd8ed1ab_0 conda-forge
snappy 1.1.9 hbd366e4_1 conda-forge
snowballstemmer 2.2.0 pyhd8ed1ab_0 conda-forge
soupsieve 2.3.2.post1 pyhd8ed1ab_0 conda-forge
sphinx 5.2.1 pyhd8ed1ab_0 conda-forge
sphinx-astropy 1.7.0 pyhd8ed1ab_0 conda-forge
sphinx-automodapi 0.14.1 pyhd8ed1ab_1 conda-forge
sphinx-gallery 0.11.1 pyhd8ed1ab_0 conda-forge
sphinx-jsonschema 1.19.1 pyhd8ed1ab_0 conda-forge
sphinx_bootstrap_theme 0.8.1 pyhd8ed1ab_0 conda-forge
sphinx_rtd_theme 1.0.0 pyhd8ed1ab_0 conda-forge
sphinxcontrib-apidoc 0.3.0 py_1 conda-forge
sphinxcontrib-applehelp 1.0.2 py_0 conda-forge
sphinxcontrib-bibtex 2.5.0 pyhd8ed1ab_0 conda-forge
sphinxcontrib-devhelp 1.0.2 py_0 conda-forge
sphinxcontrib-htmlhelp 2.0.0 pyhd8ed1ab_0 conda-forge
sphinxcontrib-jsmath 1.0.1 py_0 conda-forge
sphinxcontrib-qthelp 1.0.3 py_0 conda-forge
sphinxcontrib-serializinghtml 1.1.5 pyhd8ed1ab_2 conda-forge
sqlite 3.39.3 h4ff8645_0 conda-forge
stack_data 0.5.1 pyhd8ed1ab_0 conda-forge
sympy 1.10.1 py38h578d9bd_1 conda-forge
tenacity 8.1.0 pyhd8ed1ab_0 conda-forge
terminado 0.15.0 py38h578d9bd_0 conda-forge
tinycss2 1.1.1 pyhd8ed1ab_0 conda-forge
tk 8.6.12 h27826a3_0 conda-forge
toml 0.10.2 pyhd8ed1ab_0 conda-forge
tomli 2.0.1 pyhd8ed1ab_0 conda-forge
tornado 6.2 py38h0a891b7_0 conda-forge
tqdm 4.64.1 pyhd8ed1ab_0 conda-forge
traitlets 5.4.0 pyhd8ed1ab_0 conda-forge
typed-ast 1.5.4 py38h0a891b7_0 conda-forge
typing-extensions 4.3.0 hd8ed1ab_0 conda-forge
typing_extensions 4.3.0 pyha770c72_0 conda-forge
unicodedata2 14.0.0 py38h0a891b7_1 conda-forge
urllib3 1.26.11 pyhd8ed1ab_0 conda-forge
wcwidth 0.2.5 pyh9f0ad1d_2 conda-forge
webencodings 0.5.1 py_1 conda-forge
wheel 0.37.1 pyhd8ed1ab_0 conda-forge
widgetsnbextension 4.0.3 pyhd8ed1ab_0 conda-forge
xorg-kbproto 1.0.7 h7f98852_1002 conda-forge
xorg-libice 1.0.10 h7f98852_0 conda-forge
xorg-libsm 1.2.3 hd9c2040_1000 conda-forge
xorg-libx11 1.7.2 h7f98852_0 conda-forge
xorg-libxau 1.0.9 h7f98852_0 conda-forge
xorg-libxdmcp 1.1.3 h7f98852_0 conda-forge
xorg-libxext 1.3.4 h7f98852_1 conda-forge
xorg-libxrender 0.9.10 h7f98852_1003 conda-forge
xorg-renderproto 0.11.1 h7f98852_1002 conda-forge
xorg-xextproto 7.3.0 h7f98852_1002 conda-forge
xorg-xproto 7.0.31 h7f98852_1007 conda-forge
xz 5.2.6 h166bdaf_0 conda-forge
yaml 0.2.5 h7f98852_2 conda-forge
zeromq 4.3.4 h9c3ff4c_1 conda-forge
zipp 3.8.1 pyhd8ed1ab_0 conda-forge
zlib 1.2.12 h166bdaf_3 conda-forge
zstd 1.5.2 h6239696_4 conda-forge```
timkpaine commented
this is specific to conda conda-forge/qgrid-feedstock#18