quiltdata/nf-quilt

quilt_sumarize.json: wrong path for child HTML files

Closed this issue · 4 comments

drernie commented

Should include parent: multiqc/multiqc_report.html

expand_more
[
0: "README_NF_QUILT.md"
1: "multiqc_report.html"
]

Also, no longer see the nf_quilt directory files...

drernie commented

Replace String filename = path.getFileName()
with relative path.

drernie commented

Ah, we capture the paths, but only keep the key name (instead the full value paths):

String qs_json = JsonOutput.toJson(quilt_summarize.keySet() as String[])

drernie commented 
{
    "README_NF_QUILT.md": "README_NF_QUILT.md",
    "multiqc_report.html": "multiqc/multiqc_report.html"
}