qurit/rt-utils

Use force=True to force reading in rt_utils/image_helper.py (load_dcm_images_from_path )

xfuren opened this issue · 3 comments

xfuren commented

Sometime we have not-so-standard DICOM files....
Suggestion...

        ds = dcmread(os.path.join(root, file),force=True)
        if hasattr(ds, 'ImageOrientationPatient'):
            series_data.append(ds)
asim-shrestha commented

Hi xfuren, we haven't dealt with this since we dont like potentially going against the DICOM standard but we can add an optional parameter to set this

YadiHe commented

Maybe Ihave not-so-standard DICOM files，But
ds = dcmread(os.path.join(root, file),force=True)

still：
dicom_path exists: True
RT Structure file found: /root/autodl-tmp/datasets/CBCT/001925CBCT/RS.001925.dcm
Error reading RT Structure /root/autodl-tmp/datasets/CBCT/001925CBCT/RS.001925.dcm: No DICOM Images found in input path.

ekamperi commented

I also encountered the error:

AttributeError: 'FileDataset' object has no attribute 'ImageOrientationPatient'

from an RTSTRUCT file generated by varian eclipse 16.1. I thought those were pretty standard. No?