r-hub/rhub

jags does not appear to be installed on Fedora Linux, R-devel, clang, gfortran

cschwarz-stat-sfu-ca opened this issue · 3 comments

cschwarz-stat-sfu-ca commented

Doing a package check using devtools;:check_rhub()

Fedora Linux, R-devel, clang, gfortran fails with message ...

ERROR: dependency ‘R2jags’ is not available for package ‘BTSPAS’

  • removing ‘/home/docker/R/BTSPAS’
    Warning messages:
    1: In i.p(...) : installation of package ‘rjags’ had non-zero exit status
    2: In i.p(...) : installation of package ‘R2jags’ had non-zero exit status
    3: In i.p(...) :
    installation of package ‘/tmp/Rtmpn5SWFU/file12f62f21e46/BTSPAS_2024.4.1.tar.gz’ had non-zero exit status
  • installing source package ‘rjags’ ...
    ** package ‘rjags’ successfully unpacked and MD5 sums checked
    ** using staged installation
    checking for pkg-config... /usr/bin/pkg-config
    configure: WARNING: pkg-config file for jags 4 unavailable
    configure: WARNING: Consider adding the directory containing jags.pc
    configure: WARNING: to the PKG_CONFIG_PATH environment variable
    configure: Attempting legacy configuration of rjags
    checking for jags... no
    configure: error: "automatic detection of JAGS failed. Please use pkg-config to locate the JAGS library. See the INSTALL file for details."
    ERROR: configuration failed for package ‘rjags’
  • removing ‘/home/docker/R/rjags’

See https://builder.r-hub.io/status/original/BTSPAS_2024.4.1.tar.gz-ed4a5d245f014c3895b10f4cd13d79d5

Thanks
Carl Schwarz

gaborcsardi commented

System dependencies are installed as needed, you need to declare them in the SystemRequirements field of your package.

That said, I suggest you try https://github.com/r-hub/rhub2 instead.

cschwarz-stat-sfu-ca commented
gaborcsardi commented

This issue is about the previous R-hub system, it does not apply to the new system, so I am closing it now. Please see https://r-hub.github.io/rhub/ for the new system, R-hub v2.