not working for terra SpatRaster
Closed this issue · 3 comments
simonpcastillo commented
library(terra); library(landscapemetrics)
f <- system.file("ex/elev.tif", package="terra")
r <- rast(f)
perim_lsm <- lsm_p_perim(r)
Error in methods::as(landscape, "Raster") :
no method or default for coercing “SpatRaster” to “Raster”
Nowosad commented
Hi @simonpcastillo -- please check if your packages (especially landscapemetrics, terra, and raster) are up-to-date.
library(terra); library(landscapemetrics)
#> terra 1.5.21
f <- system.file("ex/elev.tif", package="terra")
r <- rast(f)
perim_lsm <- lsm_p_perim(r)
perim_lsm
#> # A tibble: 4,292 × 6
#> layer level class id metric value
#> <int> <chr> <int> <int> <chr> <dbl>
#> 1 1 patch 141 1 perim 0.0333
#> 2 1 patch 141 2 perim 0.0333
#> 3 1 patch 142 3 perim 0.0333
#> 4 1 patch 142 4 perim 0.0500
#> 5 1 patch 144 5 perim 0.0333
#> 6 1 patch 145 6 perim 0.0333
#> 7 1 patch 145 7 perim 0.0333
#> 8 1 patch 146 8 perim 0.0333
#> 9 1 patch 146 9 perim 0.0333
#> 10 1 patch 151 10 perim 0.0333
#> # … with 4,282 more rowsCreated on 2022-04-18 by the reprex package (v2.0.1)
Session info
sessioninfo::session_info()
#> ─ Session info ───────────────────────────────────────────────────────────────
#> setting value
#> version R version 4.1.3 (2022-03-10)
#> os Fedora Linux 35 (Thirty Five)
#> system x86_64, linux-gnu
#> ui X11
#> language (EN)
#> collate en_US.UTF-8
#> ctype en_US.UTF-8
#> tz Europe/Warsaw
#> date 2022-04-18
#> pandoc 2.14.0.3 @ /usr/libexec/rstudio/bin/pandoc/ (via rmarkdown)
#>
#> ─ Packages ───────────────────────────────────────────────────────────────────
#> package * version date (UTC) lib source
#> cli 3.2.0 2022-02-14 [2] CRAN (R 4.1.2)
#> codetools 0.2-18 2020-11-04 [2] CRAN (R 4.1.1)
#> crayon 1.5.1 2022-03-26 [2] CRAN (R 4.1.2)
#> digest 0.6.29 2021-12-01 [2] CRAN (R 4.1.3)
#> ellipsis 0.3.2 2021-04-29 [2] CRAN (R 4.1.1)
#> evaluate 0.15 2022-02-18 [2] CRAN (R 4.1.2)
#> fansi 1.0.3 2022-03-24 [2] CRAN (R 4.1.2)
#> fastmap 1.1.0 2021-01-25 [2] CRAN (R 4.1.1)
#> fs 1.5.2 2021-12-08 [2] CRAN (R 4.1.2)
#> glue 1.6.2 2022-02-24 [2] CRAN (R 4.1.2)
#> highr 0.9 2021-04-16 [2] CRAN (R 4.1.1)
#> htmltools 0.5.2 2021-08-25 [2] CRAN (R 4.1.1)
#> knitr 1.38 2022-03-25 [2] CRAN (R 4.1.2)
#> landscapemetrics * 1.5.4 2021-09-03 [2] CRAN (R 4.1.1)
#> lattice 0.20-45 2021-09-22 [2] CRAN (R 4.1.1)
#> lifecycle 1.0.1 2021-09-24 [2] CRAN (R 4.1.1)
#> magrittr 2.0.3 2022-03-30 [2] CRAN (R 4.1.3)
#> pillar 1.7.0 2022-02-01 [2] CRAN (R 4.1.2)
#> pkgconfig 2.0.3 2019-09-22 [2] CRAN (R 4.1.1)
#> purrr 0.3.4 2020-04-17 [2] CRAN (R 4.1.1)
#> R.cache 0.15.0 2021-04-30 [2] CRAN (R 4.1.1)
#> R.methodsS3 1.8.1 2020-08-26 [2] CRAN (R 4.1.1)
#> R.oo 1.24.0 2020-08-26 [2] CRAN (R 4.1.1)
#> R.utils 2.11.0 2021-09-26 [2] CRAN (R 4.1.1)
#> raster 3.5-15 2022-01-22 [2] CRAN (R 4.1.3)
#> Rcpp 1.0.8.3 2022-03-17 [2] CRAN (R 4.1.2)
#> reprex 2.0.1 2021-08-05 [2] CRAN (R 4.1.1)
#> rgdal 1.5-30 2022-04-08 [2] CRAN (R 4.1.3)
#> rlang 1.0.2 2022-03-04 [2] CRAN (R 4.1.2)
#> rmarkdown 2.13 2022-03-10 [2] CRAN (R 4.1.2)
#> rstudioapi 0.13 2020-11-12 [2] CRAN (R 4.1.1)
#> sessioninfo 1.2.2 2021-12-06 [2] CRAN (R 4.1.2)
#> sp 1.4-6 2021-11-14 [2] CRAN (R 4.1.1)
#> stringi 1.7.6 2021-11-29 [2] CRAN (R 4.1.3)
#> stringr 1.4.0 2019-02-10 [2] CRAN (R 4.1.1)
#> styler 1.7.0 2022-03-13 [2] CRAN (R 4.1.2)
#> terra * 1.5-21 2022-02-17 [2] CRAN (R 4.1.2)
#> tibble 3.1.6 2021-11-07 [2] CRAN (R 4.1.3)
#> utf8 1.2.2 2021-07-24 [2] CRAN (R 4.1.1)
#> vctrs 0.4.0 2022-03-30 [2] CRAN (R 4.1.3)
#> withr 2.5.0 2022-03-03 [2] CRAN (R 4.1.2)
#> xfun 0.30 2022-03-02 [2] CRAN (R 4.1.2)
#> yaml 2.3.5 2022-02-21 [2] CRAN (R 4.1.2)
#>
#> [1] /home/jn/R/x86_64-redhat-linux-gnu-library/4.1
#> [2] /usr/local/lib/R/library
#> [3] /usr/lib64/R/library
#> [4] /usr/share/R/library
#>
#> ──────────────────────────────────────────────────────────────────────────────simonpcastillo commented
Everything is working, thanks
Nowosad commented
Awesome