racalzadilla
Evolution + genetics + systems biology + idepi + theoretical biology. I'm in the business of counting people, molecules, and the shit that happens to them.
Puerto Rico Department of HealthPuerto Rico
racalzadilla's Stars
lllyasviel/Fooocus
Focus on prompting and generating
lutzroeder/netron
Visualizer for neural network, deep learning and machine learning models
OthersideAI/self-operating-computer
A framework to enable multimodal models to operate a computer.
Lyken17/pytorch-OpCounter
Count the MACs / FLOPs of your PyTorch model.
google/TensorNetwork
A library for easy and efficient manipulation of tensor networks.
quantumlib/OpenFermion
The electronic structure package for quantum computers.
jerryji1993/DNABERT
DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome
MAGICS-LAB/DNABERT_2
[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome
WGLab/doc-ANNOVAR
Documentation for the ANNOVAR software
leeping/geomeTRIC
Geometry optimization code that includes the TRIC coordinate system
MachineLearningLifeScience/meaningful-protein-representations
Luo-SynBioLab/UniKP
marcojira/fld
PyTorch code for FLD (Feature Likelihood Divergence), FID, KID, Precision, Recall, etc. using DINOv2, InceptionV3, CLIP, etc.
cartal/HCA_Heart
This is the official repository for the Human Cell Atlas Heart project.
althonos/mini3di
A NumPy port of the foldseek code for encoding protein structures to 3di.
weinbe58/QuSpin
A python wrapper for doing ED calculations on many-body systems
SpinWaveGenie/SpinWaveGenie
Library for simplifying linear spin wave calculations.
jbloomlab/phydms
phylogenetic analyses informed by deep mutational scanning data
john-hewitt/dyckkm-learning
Codebase implementing LMs for learning the Dyck-(k,m) bounded hierarchical language
MachineLearningLifeScience/torchplot
Plotting pytorch tensors made easy!
maxibor/comp_dnds
Measure evolutionary pressure by efficiently computing dN/dS according to the Nei-Gojobori method
ojcharles/MutationFeatures
Generate a rich feature space describing all possible mutations in a given protein sequence (+ structure)
hyanwong/GeneticInheritanceGraphLibrary
ojcharles/viral_alphafold
Various Alphafold2 structures of viral proteins
fosterlab/CFTK
The co-fractionation toolkit
hzhou43/viscoelasticity-of-biomolecular-condensates
skinnider/CFdb-analysis
skinnider/CFdb-searches
CSB-Thukral-Lab/Spike_structural_models_Delta_and_Omicron
elo073/Lung5loc_scRNAseq_omcr_entrygenes
ACE2 and TMPRSS2 gene expression in human lung and airways single-cell RNAseq dataset